RNA id: TU35266



Basic Information


Item Value
RNA id TU35266
length 820
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G26216
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44735834 ~ 44736653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCTGGGTACAATCTTTTCCAAATGATTTCAATCGGTTTAATACACAGCTAAGCCCAAATGATCAAAACACCATTTAAAGCATGTGAGCTCTCACTGGATGAGAGCCAAAAGACAACTGTTTTACATCTTCTACTGCAAGCCCATCATACTGCATTCTTCAGAGGCAATGCTAATGACTAAAGAATACCATGCAGGTGAGGAGTCCATTAGACATTACAGGCTGAAGCGTGAATGCTACTACAGCACAACAGGGCAAAATAccttacaatattttacatagtataCTGTTTTCTATACGCAATCTATTTACCTTTTATCTATCAATATCTTTTTAATTCAAGGTTCCAATTAGATTAGAAGTTTCCCATACGTTTTTACCACACTTCCCTTCAGTTTTTATACATGATaacatacagtgccctccacAACATTTCTAATAAAGCCATACAGATACAAAGACAATACACATTGCATGTTACAGTGAAACACACAAACCACTAAATAGAATGGATTTAAAAGCTGTGCAAAGTTACTTACAGTACTTTCTTAGTCATTTTAACTCAAAGTTTTTAAGCGACACATACTGAACATGCTGagagagcatcactacaggacagtgtgtgaatgtgtatttGTTCATCTTACCTTATTTACTGACaggagataaaactagctccgttttaaaagtgtattttctggcttctacagctctgttccaaccatttaaccattcaaacctcttaattaaatgttttaagttcCAAAGAACTAGCTCTGACCCAATTTCTagaacaaacattttaaataacaccaaattttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35252 lncRNA upstream 47431 44683188 ~ 44688403 (+) True G26202
TU35148 lncRNA upstream 358307 44377325 ~ 44377527 (+) True G26124
TU35145 lncRNA upstream 367903 44364592 ~ 44367931 (+) True G26121
TU35127 lncRNA upstream 412012 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 463330 44272294 ~ 44272504 (+) True G26088
TU35267 lncRNA downstream 514 44737167 ~ 44738115 (+) True G26217
TU35278 lncRNA downstream 31504 44768157 ~ 44768487 (+) True G26225
TU35279 lncRNA downstream 32609 44769262 ~ 44770002 (+) True G26226
TU35289 lncRNA downstream 63331 44799984 ~ 44800646 (+) True G26235
TU35342 lncRNA downstream 117228 44853881 ~ 44854510 (+) True G26280
XM_022686638.1 mRNA upstream 8629 44710373 ~ 44727205 (+) True LOC111197225
XM_022668053.1 mRNA upstream 42662 44673130 ~ 44693172 (+) True LOC111191907
XM_007256614.3 mRNA upstream 255930 44474148 ~ 44479904 (+) True LOC103046392
XM_007256619.3 mRNA upstream 263903 44460685 ~ 44471931 (+) True vipas39
XM_022686599.1 mRNA upstream 275575 44417438 ~ 44460259 (+) True cdc42bpb
XM_007229711.3 mRNA downstream 66906 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA downstream 66924 44803577 ~ 44808849 (+) False wdcp
XM_022686646.1 mRNA downstream 135811 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA downstream 135812 44872465 ~ 44960236 (+) True atad2b
XM_015605208.2 mRNA downstream 697266 45433919 ~ 45441256 (+) True LOC103023922
TU34777 other upstream 1241519 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1310928 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1313788 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1372390 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2219277 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1791742 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3541614 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3544112 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3819144 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3819144 48555797 ~ 48641905 (+) False G26995

Expression Profile