RNA id: TU35289



Basic Information


Item Value
RNA id TU35289
length 663
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G26235
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44799984 ~ 44800646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


caagggcgtaggagcgggtttgatattgggggggacacttTTGCTAATGCACCAAAGCCCATATAgtttcttagaacaacatttaaggaattacttttaatcacaaataatcccttttttctgtactctgtttattattagttacatccaagtaaaggtgactttacaaccaccatgttactccacattacatttaaacaaatatgcgtgaaatgtctgaattatatacatatatgacaaaaactgatcagttatcatctgCGCTTTTagttgtttctactgaaagcacttcttatgatggtgtccttttttgaaaaaagaatgtaactttacgtttcatagagatttttgacagaagttaatataaatattagactaaagaaaaaaacatttggattcaCCTGGAATCCCTCTATTTACTCAGGATttagtcttactgtgaactacaaataaacagaagtcaggttagagcagtgtttctcaaccctgttcctaCACATTCTACTGCATATCCCCACTGCcttctctgctttaaagtcacttaataaagtaagtggaggtatgatgtgtctaatacactgctgacatacataatgaaaaggatttaaacaggtaaactcagtaaaggactgtttattagctaatcagttggatctggtagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35279 lncRNA upstream 29982 44769262 ~ 44770002 (+) True G26226
TU35278 lncRNA upstream 31497 44768157 ~ 44768487 (+) True G26225
TU35267 lncRNA upstream 61869 44737167 ~ 44738115 (+) True G26217
TU35266 lncRNA upstream 63331 44735834 ~ 44736653 (+) True G26216
TU35252 lncRNA upstream 111581 44683188 ~ 44688403 (+) True G26202
TU35342 lncRNA downstream 53235 44853881 ~ 44854510 (+) True G26280
TU35350 lncRNA downstream 64497 44865143 ~ 44865684 (+) True G26286
TU35391 lncRNA downstream 310539 45111185 ~ 45112968 (+) True G26322
TU35473 lncRNA downstream 649363 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA downstream 723842 45524488 ~ 45528585 (+) True G26402
XM_022686638.1 mRNA upstream 72779 44710373 ~ 44727205 (+) True LOC111197225
XM_022668053.1 mRNA upstream 106812 44673130 ~ 44693172 (+) True LOC111191907
XM_007256614.3 mRNA upstream 320080 44474148 ~ 44479904 (+) True LOC103046392
XM_007256619.3 mRNA upstream 328053 44460685 ~ 44471931 (+) True vipas39
XM_022686599.1 mRNA upstream 339725 44417438 ~ 44460259 (+) True cdc42bpb
XM_007229711.3 mRNA downstream 2913 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA downstream 2931 44803577 ~ 44808849 (+) False wdcp
XM_022686646.1 mRNA downstream 71818 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA downstream 71819 44872465 ~ 44960236 (+) True atad2b
XM_015605208.2 mRNA downstream 633273 45433919 ~ 45441256 (+) True LOC103023922
TU34777 other upstream 1305669 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1375078 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1377938 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1436540 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2283427 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1727749 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3477621 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3480119 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3755151 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3755151 48555797 ~ 48641905 (+) False G26995

Expression Profile