RNA id: TU35342


Basic Information

Item Value
RNA id TU35342
length 630
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G26280
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44853881 ~ 44854510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGGAGGGTTAGTGGCGtcattttttaaaccaaaaataatGCACTTAGTCTTATTAGTGTTAAGACGGAGATGGAGGTTTTGAAAGGACTGCTCAATGGAGGTGAGGCTAAGTTGAAGTGTAGAAGCTGCAGAGTGAAGTGAGGGACCAAATGAATATAGAATGGTATCATCAGCATAAAGATGTATATGTGAATTACCAGCAGCTTTGGCTACATCATTAATGTAGATAGAAAACAAGGTTGGACCCAGAATGGAACCCTGAGGTACACCTTTAAATATGGCTAGTGGCTCGGACAGAAAGTTTTCTGTTTTCAGCTGCTGAACACGGCCTACTAAATAGCTGGCAAACCAATCACAGCAGGAGGTGGACAAACCAATACTAGAAAGCCGACTTAGGAGAACTCTATGATCAACTGAATCAAAGGCTTTGGCTAGGTCAATGAAGGCAGCTATACAGGTCTTCTTGCTGTCTAATGCCGTGATAATATCATCAAGGACCTTTGTGACAGCGGTCATACAACCATATCCAGCCCGAAAACCAGATTGAAAGTCAGACAAGATGTTATTTGAGGCAAGGAAGTAGCTTAACTGTTTATGGACCAGCCTCTCCATGACTTTGGCTAGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35289 lncRNA upstream 53235 44799984 ~ 44800646 (+) True G26235
TU35279 lncRNA upstream 83879 44769262 ~ 44770002 (+) True G26226
TU35278 lncRNA upstream 85394 44768157 ~ 44768487 (+) True G26225
TU35267 lncRNA upstream 115766 44737167 ~ 44738115 (+) True G26217
TU35266 lncRNA upstream 117228 44735834 ~ 44736653 (+) True G26216
TU35350 lncRNA downstream 10633 44865143 ~ 44865684 (+) True G26286
TU35391 lncRNA downstream 256675 45111185 ~ 45112968 (+) True G26322
TU35473 lncRNA downstream 595499 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA downstream 669978 45524488 ~ 45528585 (+) True G26402
TU35583 lncRNA downstream 1212378 46066888 ~ 46067187 (+) True G26476
XM_007229711.3 mRNA upstream 45032 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA upstream 45032 44803577 ~ 44808849 (+) False wdcp
XM_022686638.1 mRNA upstream 126676 44710373 ~ 44727205 (+) True LOC111197225
XM_022668053.1 mRNA upstream 160709 44673130 ~ 44693172 (+) True LOC111191907
XM_007256614.3 mRNA upstream 373977 44474148 ~ 44479904 (+) True LOC103046392
XM_022686646.1 mRNA downstream 17954 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA downstream 17955 44872465 ~ 44960236 (+) True atad2b
XM_015605208.2 mRNA downstream 579409 45433919 ~ 45441256 (+) True LOC103023922
XM_007229703.3 mRNA downstream 579412 45433922 ~ 45441256 (+) False LOC103023922
XM_007229697.2 mRNA downstream 641171 45495681 ~ 45501646 (+) True LOC103022161
TU34777 other upstream 1359566 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1428975 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1431835 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1490437 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2337324 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1673885 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3423757 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3426255 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3701287 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3701287 48555797 ~ 48641905 (+) False G26995

Expression Profile