RNA id: XM_022686658.1


Basic Information

Item Value
RNA id XM_022686658.1
length 1572
RNA type mRNA
GC content 0.47
exon number 6
gene id ubxn2a
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44856099 ~ 44870690 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGGTGGGCGCTTACGTCACGGGAATGGCTGTGTAGCTGTAGTGAGGAGAAAGGTGTGTTGCTGACAGAAACTTTGAAGTCCAGGACCCGACTGTGCTGGCTGTGAATGGACTCTCAGACCGCTCTTAGGTGTGATGGTGCTCAAAACGATGATGACGAGGAGGAGGAGACCGAGACCCCCATGAGGCCCAGTTTCTCTGTAGAGGACCTTCTAGATGAGGTGGAGAAGATTGGGAGTGTCTCCACGGGTGGAAAAAagGTGGAGATTGTTGTAAGACTGTGGAAAGATGGCTTCACTGTGAATGACGAGGATTTTCGCAGCTACTCCTTGGAAGAGAACCAGGACTTTCTCGAAGCCATTAAACGAGGGGAACTGCCTTTGGAGCTGGAGGGGAGAGCAGAGGACGAGGAGTTGGAGGTCAACGTGGAGGACATGAAGGATGAAATTTATGTCCCaaagaagaagccttttcttcCATTTACTGGTAGAGGATATAGACTGGGCAGcgtgGCGCCACGGGTGGTGGCCAGGTCTCGGTCAATACACGAGGACTGCTCAGTACCTCCCGTCCCTCCAGTGCCGGTGGACGAAAGCCTGCCTATCACCTCCCTGCAGATTTGGTTGGCAGACGGCCGGCGGCTCGTCCAGaggtttaacctcactcaccgAATCAGTGATGTCCAAGACTTTGTGGAGAAGGCCCAGTGTACAAGCTCACCATTTATCTTAACCACATCTCTGCCTTTTCGGGAGCTGACAGAGGGTGGACTGAGCCTGGAGGAGGCTGACCTGACAAATGCAGTCATTGTCCAGCGGCCACTCAACACACAAGCACCTTTTGGTCACTCCTGACTGAAGATATCTGTACTaaaagtgtgcagatctgttggTCACCACTTTGATCACCTTAAAGCATGGAGATACCAGTTCATAGACTTTCCTGACAACAACAACTCCcagtatttaaatgttaaaaagctGCTTAAAAGTCCTAATCATCTCAGACCTCTCCATTCATCAGTCCAGTGTGAAAGTGCAGTTAAGAACTCAATGACACTGATGAATGCGAGAAGGACAGTGATGAAAGAAACCCCCCTCACTCTTACcttgcattttcatttttcagaagGAAGGCAATAATCGGTACCTGCTGGCCTGCTAATcatgtgtaaatgctgcataTAGCTTGAAAACTGCAGGGAGTGCAGTTCTTATTTCTGACTGTCATTATCTATACTTCCCTTGCTGGATGCCTTGGCCTCCTCTGATGCAATGCAGTACGCACAAGCCACGTATTTAATATCAGCGTTCAATAAATGTCTCAGAAACTGCTGTCTGAGTGGTATAAATAATCAGACAGCACTTCTGTGTTTATCACAGGCTTGATTGCATTTTGCCTTACCAGAGCGGTGAGACTTCTGTTGTTTGTGTTGAAATGTTTGCTGATGTGTTGTAAGCATTTAAAGCAGAATTTATTTGCAATTGGCAGACATGTTAATGCACTTTGCCTAAGCGAGATGTTCTTTGTACAGGACCTCGGCTTGCAATAAatctattaaatttatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35340 lncRNA downstream 2528 44853068 ~ 44853571 (-) True G26278
TU35295 lncRNA downstream 157184 44698411 ~ 44698915 (-) True G26240
TU35293 lncRNA downstream 167277 44683188 ~ 44688822 (-) True G26238
XR_002652393.1 lncRNA downstream 240518 44614210 ~ 44615581 (-) True LOC111197214
TU35199 lncRNA downstream 411137 44441661 ~ 44444962 (-) True G26158
TU35412 lncRNA upstream 241848 45112538 ~ 45113961 (-) True LOC111197337
XR_002652400.1 lncRNA upstream 242021 45112711 ~ 45113769 (-) False LOC111197337
TU35416 lncRNA upstream 272200 45142890 ~ 45160930 (-) True G26345
TU35418 lncRNA upstream 369211 45239901 ~ 45240218 (-) True G26347
TU35468 lncRNA upstream 537743 45408433 ~ 45410036 (-) True G26386
XM_007229714.3 mRNA downstream 5006 44808826 ~ 44851093 (-) True LOC103027014
XM_022686639.1 mRNA downstream 56594 44769264 ~ 44799505 (-) False fkbp1b
XM_007229715.3 mRNA downstream 56613 44769264 ~ 44799486 (-) True fkbp1b
XM_007229716.2 mRNA downstream 95894 44737167 ~ 44760205 (-) True mut
XM_007229717.2 mRNA downstream 280827 44525886 ~ 44575272 (-) False LOC103028241
XM_007229706.2 mRNA upstream 112554 44983244 ~ 45315255 (-) True klhl29
XM_007229705.3 mRNA upstream 488220 45358910 ~ 45365846 (-) True trib2
XM_007229702.2 mRNA upstream 570748 45441438 ~ 45448166 (-) True LOC103023605
XM_022686708.1 mRNA upstream 570748 45441438 ~ 45446516 (-) False LOC103023605
XM_022686715.1 mRNA upstream 580596 45451286 ~ 45465612 (-) False gpcpd1
TU35290 other downstream 56624 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other downstream 56624 44769292 ~ 44799475 (-) False fkbp1b
TU34885 other downstream 1177237 43675025 ~ 43678862 (-) True G25967
TU34644 other downstream 1744698 43098822 ~ 43111401 (-) True G25785
TU34500 other downstream 2137710 42717666 ~ 42718389 (-) True G25678
TU35363 other upstream 12088 44882778 ~ 44885801 (-) True G26295
TU35470 other upstream 565419 45436109 ~ 45437585 (-) True G26388
TU35737 other upstream 1064463 45935153 ~ 45935622 (-) True G26588
TU35796 other upstream 1421397 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 1556727 46427417 ~ 46435925 (-) False naa30

Expression Profile