RNA id: TU35470


Basic Information

Item Value
RNA id TU35470
length 1413
RNA type TUCP
GC content 0.44
exon number 2
gene id G26388
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45436109 ~ 45437585 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGCTCATTTAATTATGATGTTTCCAACAACgtgcagacagagagatagatagatagatagatagatgctggtgtgtgtgtgtgttggcctCCAGTCAGTATACAGTACAGTGTATTAGATGTAACTGTTACCTCTGATGTGTTCTTAGTGCAGAGCTTTGGGAGAACCTGGCTTCACACTCGTTGCAGCTGTAGGGCTTGTCACCGGTGTGTGTTCTCTCATGCAGAGTGAGGGCTGTTCTGGAGCTTAATGATTTACCACAAATTGTACAGTAGTAGCGCTCAGTTCCACCCTCATGGACCTGCCGCCTGTGTCTCGTCACATCCTTCTTGCGTTTAAAGGCCTTCTTACAGACGTCACATGGAAAGAGCCTGTCGTCATTGTGCACATGCCGTTTATGGATTTTAAGGTTGCAGCGGTTGGCAAAAGTCTGCTGGCAGATATCACAGCGGTAGGTAGTGTCAGTCTCAATGCCATGACTAACTTTGACATGCTTCAGGTAGCTCTTCTCATAGCGAAATGAACGACAGCACTTTTGACAGTCATATTTGGAACTACCCGACTTTTGTTCCTTTTCAGCCTCATCTGTTTCTTCTTTGGCTTCAGCTGGCAGGAACTCAGGGTCATGAAATTCTTCATCTGCTAAATCAATGTTGAAACTACCAGCCTCAGACCCACTGTCCATAAGGGCCTCATTCTCAGGAAAAACCTTATCACTAGCTTCTTTGGACTCACAAATGTTTAATGGCTCTTCTTGTGTTGTTCTTGTCTCTGATTCATTGGGACTTTCTGTGATGTCCAATGCCTCAGACTGGGCTTGTGACCTGCGGCCAGTCTTTTTTTTGTCGATACTGACAAAGACTTTGCTGCCTGCTAACCTGCTGCTACTCCTCCTACCCTGTGCCCTTTCATTTTCCGCCTCTTTAGTGTGGATGACTTTCATCTTTTTTCTCATACCTAATGATTCAGTTGTTTGCTTTTCTGGCCTCcctctttttgctttttctttccctttctgtgtgttttccaaAATATAATTCAGAAGCATTGAATCACAAGCCTCCACTAAGTTTTGGCAGTCCAGCTGCTTCGCCATCAGCAATATGTGGCTAAGGTAGCTCTTTTCCACTTCCATTTTCCCCGAATATGCGTATTCTAGAAATTTGGCAAAGGCTTTGGGTGCAAAATcatttaagaatattttattcACTTGTTCATTCGCCAAGATGCAGGTCTTGAAATAGCCACTGGATGCGGCAAGTATTATCTGGTGGGCCTCAAATTCTTCCAGCTGACCTTGGAAATCAACCTGCACTGTGATATCACACAGATCACCATTGGCCCTTAGGTTCCACATTGCCTCAAGCAAATTTTCCTGATAACAGCTGGATACCAGCTGAACCACTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35468 lncRNA downstream 26073 45408433 ~ 45410036 (-) True G26386
TU35418 lncRNA downstream 195891 45239901 ~ 45240218 (-) True G26347
TU35416 lncRNA downstream 275179 45142890 ~ 45160930 (-) True G26345
TU35412 lncRNA downstream 322148 45112538 ~ 45113961 (-) True LOC111197337
XR_002652400.1 lncRNA downstream 322340 45112711 ~ 45113769 (-) False LOC111197337
XR_002649723.1 lncRNA upstream 160002 45597587 ~ 45604161 (-) True LOC111191909
XR_002652433.1 lncRNA upstream 295731 45733316 ~ 45742850 (-) True LOC111197418
TU35704 lncRNA upstream 405589 45843174 ~ 45844931 (-) True G26563
TU35706 lncRNA upstream 410032 45847617 ~ 45849592 (-) True G26564
TU35764 lncRNA upstream 629063 46066648 ~ 46067188 (-) True G26612
XM_007229705.3 mRNA downstream 70263 45358910 ~ 45365846 (-) True trib2
XM_007229706.2 mRNA downstream 120854 44983244 ~ 45315255 (-) True klhl29
XM_022686658.1 mRNA downstream 565419 44856099 ~ 44870690 (-) False ubxn2a
XM_022686654.1 mRNA downstream 565419 44856099 ~ 44870690 (-) False ubxn2a
XM_022686664.1 mRNA downstream 565419 44856099 ~ 44870690 (-) True ubxn2a
XM_007229702.2 mRNA upstream 3853 45441438 ~ 45448166 (-) True LOC103023605
XM_022686708.1 mRNA upstream 3853 45441438 ~ 45446516 (-) False LOC103023605
XM_022686715.1 mRNA upstream 13701 45451286 ~ 45465612 (-) False gpcpd1
XM_022686726.1 mRNA upstream 13701 45451286 ~ 45465612 (-) True gpcpd1
XM_022686721.1 mRNA upstream 13701 45451286 ~ 45465611 (-) False gpcpd1
TU35363 other downstream 550308 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 565430 44867094 ~ 44870679 (-) False ubxn2a
TU35290 other downstream 636634 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other downstream 636634 44769292 ~ 44799475 (-) False fkbp1b
TU34885 other downstream 1757247 43675025 ~ 43678862 (-) True G25967
TU35737 other upstream 497568 45935153 ~ 45935622 (-) True G26588
TU35796 other upstream 854502 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 989832 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 1081286 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 1086063 46523648 ~ 46525996 (-) True G26695

Expression Profile