RNA id: TU35473


Basic Information

Item Value
RNA id TU35473
length 3006
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G26390
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45450009 ~ 45538939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcatggcCCCACTGTTCTACAGAGTGGGATCAGAAAATTAAGAACCCCACTCTTAAACAGAACGCTTTAACACAGAGACATGGCCATACTAACACCCGGAGAACGTAAAGAGATTTACTGAGAATGTTCAGAGGCTACAGTACattctgtaataaaacagaATAGCATTGCAGTTTGCCCAGCTTTTATTCTGCTCCTTTTTACTCTACATTTTCTTACCCTGTGTAGTCATAGAGTCAAGTTTGGTACAGAGCAAGGTGGGGAATAAGGTTGACTTGAGACAGCTTACAGATATGCCTGTAATACATGAAGTACATTGTCCTCTGCTGCATTTAATATTTGAgattttacacaataaaaaaaagaaactgatgAGGACAAGTGAAACAATGTGAAAATCTGGATGTccatatttacaataaatacagtggCCATCTGCTTTCAGATTGGGTACTCAATACCCATTAGTGATtcaagaattttttttatatcaagtaaatatggtaaatacttacaaaacagagaaataaaaaaattaaaaagttgcacaaaataaaatgtaattagtgATGGCAGCCAAAATGGTGAAGCTGGAATTATAATAAAGCAAAGTTAATTTAAAGCACTTCAAATGTACAGCATATTGGCTAATTATAACAATAAATGACCACAAGAAAGCTTAGGTATAATCtgtctctttaaatatactctGACAAGACACTTCATTAAAACACCTTTGTTTCATATACTCTCTTTGTCGATTATATCAGCTACACTGACCATATAAAAGCTGTGGTGTTAAAATAACAGACTttgggtctTGTGATggtctcagcactgcagtaacactgacatggtgattatgttagtgtgtgttgtgctggtatgagtggatcagacacagcagtgctgctggtgtttttaaacaccttagtgCCACTGCCGGTTCAcaaaccagaaatatccagccaacagtGTGCTattacaaagtgctcctatatgatcagtggagttGAGAGGGGAAAAGAGAATGTAGAAACAGGGAGGTAATTTTAATGTTGGCTGATCAGTGTAATTAAACCAGCTACTCATACCCATAAACCATTAAATCATGCTTGTTTTGGCAAAAATACTGCTTATATTAAAAACCACACAGAGTTGAGGAGTGTGTTGAGTGATTTGTACTGCTTTGTAGAAAACATGGAATTTTGTATAAAGGTTGACTGAACGCTGCAAGCTCAGGATGAACTGAGGCCCGAGTCTGACTCGCCGCTGCCAACTTGAGTTTTACTCGAACAGGGTACTGATGTGCAGGGAATACTGTACGTGGAGCAGGCACAGCTTTTCAGAGTCTCCTCAGGAATTACCTCCTTCAAAGATACTTGCTCTTCTACTTTGAAGATGTTGGGCTGCTCGAGCTGGTCATCACAGATtctagaaaaagaaaagaagtaacacatataaaataaaataggccATTAGTTATTGAGGGACAGTAAAACGGAACAAAATTGCTTTAATTTACTAGGGAATAAGCTATTATCAGGTAGTCCAGATTTACAATCAAGCTTATTTTTTGCTAAGAAGCAAGTAGGAAATGTTTCTGCATGTGTTGCAGTAATATAAGCATTACACACCATGTTCTtctcattttacacaaaatatcAAATTTAGCAGATACAGCAACGTAGAAATTGATTACGtgaaaaagcataaaaaaactgtactacAGGACAAatcacaacaacaataatattcataaatCATACACACCACAGACATACACAAGTATACTCAATGATCTGCATTtcttttcatgcatttttcttCGCTCCTGTGATAGCACTATTCATAACAAGACCAAGGActtcttaaacaaaaaaaaaacaaaaaaagtttcatCCATAGCATTATGGATACCCAGTCACATAAattgtgtaaatgtaataaacatatGTGTACTAGGGCTGTAAATAAAAGCAGTCGCAtgaaaaatatactgtacacaccAATGACTGTATAAAACATGTACACTGTGTGTTTCTATTCCCTTCCTTTCtatagtaatgaagtaaaaattgTCTAGCATGTCAGATTTTCAATCAGATgctagacctgtggtggcttcatttTTGAAAGACACTGCACTGTTCATGCTTTCTCAAGTCATTGGTTTACACCATTAGTGTAAATACGGTAAGTTTACAAGCATGCATGCCTGAGAAACCTTATGCTGTAAAATGCTGGATTTGAATAGTACTGTGGGAGTGTTATTATAGTAACTATAGCCTTGTTTGTCCCCTGATCCTTCTGATCTATAATCATGTCTTTCCCTGTCGCTGCTACCTCTAAATACTGTTCAgtattaaagagaaaaaataaacaagaatttTAGCAATATTTTGACCCTCTATTTTACTGACATCATGGTGGAGTGGACAAGGACAATGTGAACACACTTCATGAACACATTACAGGCTGCATTAAGTACATCAGGGTGGCCACCTGAGGGAAACACTGTGAATTGCACAAATATTTGTTCAAATTAAATGGGTCACTCCTATGATGAGGTTTTTCCTGTTGTACCATGCTTATACTGAACTGTAGTGTGAACAAACTATGACATTGTGTACCATTACACCCCAAGGGTGTTTTAATGTGGTCTGCAAATTAAAGATTTTCATTAAGTTAAGGGACAAAGAATTACAATAGAGTGATTCATATAGCATTTTAAAAGCAACTGTGGGGAAAACGGACAATTCAGCCATAGGTTCATTCAGCAGAGAGTCTATGGCcatattaaacatgtttctaCACCATGCTGGGTTACAAGCCAAAGCAGGCATTTATCCTCAAACTGATCAAACAGTGGGGATAAAAACTGAGgataattaaatcattaattaaaTCATGCACCTGTCACTAAGCCAATGCTGAAAGAAAGCTTTGTGACTGTGTGAAAAGCAACTGATTATGTGCTGAAAGCTGTGTAATGAATGTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35391 lncRNA upstream 337041 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 584325 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 595499 44853881 ~ 44854510 (+) True G26280
TU35289 lncRNA upstream 649363 44799984 ~ 44800646 (+) True G26235
TU35279 lncRNA upstream 680007 44769262 ~ 44770002 (+) True G26226
TU35583 lncRNA downstream 527949 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 541366 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 816946 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 824945 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 870394 46409333 ~ 46409990 (+) True G26529
XM_015605208.2 mRNA upstream 8753 45433919 ~ 45441256 (+) True LOC103023922
XM_007229703.3 mRNA upstream 8753 45433922 ~ 45441256 (+) False LOC103023922
XM_022686646.1 mRNA upstream 489773 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA upstream 489773 44872465 ~ 44960236 (+) True atad2b
XM_007229711.3 mRNA upstream 641160 44803559 ~ 44808849 (+) True wdcp
NM_001320207.1 mRNA downstream 21607 45560546 ~ 45570484 (+) True LOC103028976
XM_022686778.1 mRNA downstream 76623 45615562 ~ 45755435 (+) False LOC103021983
XM_022686776.1 mRNA downstream 76624 45615563 ~ 45765954 (+) False LOC103021983
XM_022686757.1 mRNA downstream 76625 45615564 ~ 45785454 (+) True LOC103021983
XM_022686761.1 mRNA downstream 76625 45615564 ~ 45785454 (+) False LOC103021983
TU34777 other upstream 1955694 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2025103 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2027963 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2086565 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2933452 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 989456 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2739328 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2741826 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3016858 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3016858 48555797 ~ 48641905 (+) False G26995

Expression Profile