RNA id: TU35490


Basic Information

Item Value
RNA id TU35490
length 2358
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G26402
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45524488 ~ 45528585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTTGCTCCATTAGAGAACTCGATGAGTCCAGCCACCTGCCAAGCACATTTATTTGTATCTTGGATTTTTCTCAGGTTCTTGTTTAAACCAGTTACATATTCATGACTGCTATGCTTTATATGTATAATGTGTAtggttaatatatatttactataataaCACAGTATATCTGTCAAAATGTGTTCAcaaaacactacactacattaaacactatctctctttctcttgctctctctctaaatGCAGCACTCACCCAGCATTGATTACAGATTTATCTTCCATACTAAGAGGTTGGTACATCTTGGCCAGCTCCTCTGGGGGCACGTTGGGCTGGCTGGAAGTCAGAGAGTTCTCCCCGAACCACAGGCTGGTGGCTGATGCGGGTGTTCCGTTCTCAGGGTCATAGGTCGCCGTCATGGTTTTACTGTAGAGACTGCTGCCAGCTACAGAGATTTTACATCCACATCCACTGTCATAACTGCATGCTTTTGCCGTTATCATTATTTGTTAAAACCTAGACATAATGCAGGCCTGAACAATTCTCAGACCATTAGACTGGTACCTACCTCAAAACCATGGCTAAAAGCCCCTTTATATAATTGTGCACTATTGTGTATTCTACATATggtgtgtagtatagtgtaaacAATTATTCTAATTATGTGAAGGCACCAAAGGCAGCGCACTACTGTACAggcatcattttattttattattgtttttacccAAAAGGAAAAGATAGAATTAAGATCTCTGATTGGAACAAtccaaaatctaaaatctatacACAAAGTAATTAGGATAGTTGCGTATTCATAAGTTTTCTAAACTCAAtggttttaaattaatttataatattttttgtggaGAAACTGTCTACTGTCTTGGGAAGacttttttattagaattttgAGCACttctgtaaggatttgattgcatgcaacggcaagagcattagtgattgaataaattgataaaattgaatggtcaccaccccacctcatccctaactctctgtaagtattggatggagcaccaacaATCCAGAGAACATagatccactgctccacagctcaatgggTATTATAGCCCTCTAACCTATGCCTGGCATTGATCATGGGACCAATGCATTCATGTTTAACTATTGGTAATAATACATCTCTACAGGGGCTAGAAatgctgtgtgtgcatttgtgccAGCAATGTGCACAATTCAAGtatctgaatgcattcattaaaagagGTGCTTAGAGAAacacagtgtgtatagtgtaatatTCTTCTCTGTTTCATACATTATATGACTGCCTGTGGAACAGACTGACCTATTAAAGATAATTTCTCAAAACTATGGATTTTCTAGGGCCATAAAATGTTCTAGAAATTCCATTTCAGTCACATTAACTGATCTCCACTGAGCAATAAGCCTACAACTCAGCAAAAACAAGGATGTAAGCAAAAAGTAGACAATGAAATGGTTGCAGTAAATCTCTGATAGCCCTGGGCAGATACCTGGTATCTGATGATGTATACGACACAGACTAAACAAAATCGttcattggaaaaaaaatgacaacCTTATGCACTGTCTTGCGCATTTGTACAGGTCTGGGCTATGCCTGCCTATAATAAAGAAACCTTGTATAATTCTCATTGTGTTCAATCccacagtaaacaaaacagacaCAGCTAAGTGTCAGCAACTACTACTAGTTATTtgcaattatttgttttttgtaaaaaaaactacagaaatttaaaagataatacagtatataaacaagGTATAAAGTGGGTTATAATAATCTTGGTTCTTTACCTGTTCCACTGATAACGTCCATGTCTATTATTTCATCTTCCTCCTGGTCCTTattcttgtcttttttctttttcttttttggatcATCTGGTGCTTTCAGGAGGGATAACTCCTCTGATCTTCTTATGTCTAAGAGCATGAGTGCTTTGCAAATTTCTTCCACAGCCTTGAAGACCACTGATGAGAAGCTGATGGTCAGTTTGATGGTCTTCATGTTGGGCAGCTGCAGCAACAGTGGCTTATGCTGGGGAGTAAAGCGTAGGTCAGCATCTGCTTGCACTCCATACTTATCCAGTGTCCAGTGGTTTTTCAACAGCCAGCAGTTCTTCTTTTCCCACCACAGGGCATGATCTGACCAGTTCTGAGGGGTCTCTGCCACAATGATCTTCTCCACGAGTTTGAGCATGAGTCCTCCAATGTGAAGATCTCCCTTAACCAGAATTTTAAACTTCATGCTCTCATCTCCTTGCCGCTGATCCACTTGGATCGACAGCTCCCATGAGTTTTGGCGCTCAGCAGCGGTGACCATGGCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35391 lncRNA upstream 411520 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 658804 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 669978 44853881 ~ 44854510 (+) True G26280
TU35289 lncRNA upstream 723842 44799984 ~ 44800646 (+) True G26235
TU35279 lncRNA upstream 754486 44769262 ~ 44770002 (+) True G26226
TU35583 lncRNA downstream 538303 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 551720 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 827300 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 835299 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 880748 46409333 ~ 46409990 (+) True G26529
XM_007229697.2 mRNA upstream 22842 45495681 ~ 45501646 (+) True LOC103022161
XM_015605208.2 mRNA upstream 83232 45433919 ~ 45441256 (+) True LOC103023922
XM_007229703.3 mRNA upstream 83232 45433922 ~ 45441256 (+) False LOC103023922
XM_022686646.1 mRNA upstream 564252 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA upstream 564252 44872465 ~ 44960236 (+) True atad2b
NM_001320207.1 mRNA downstream 31961 45560546 ~ 45570484 (+) True LOC103028976
XM_022686778.1 mRNA downstream 86977 45615562 ~ 45755435 (+) False LOC103021983
XM_022686776.1 mRNA downstream 86978 45615563 ~ 45765954 (+) False LOC103021983
XM_022686757.1 mRNA downstream 86979 45615564 ~ 45785454 (+) True LOC103021983
XM_022686761.1 mRNA downstream 86979 45615564 ~ 45785454 (+) False LOC103021983
TU34777 other upstream 2030173 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2099582 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2102442 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2161044 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3007931 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 999810 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2749682 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2752180 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3027212 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3027212 48555797 ~ 48641905 (+) False G26995

Expression Profile