RNA id: TU35587


Basic Information

Item Value
RNA id TU35587
length 1518
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G26477
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46080305 ~ 46083403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATAATCTACAAAAAACTCTCAATGTATGatttttgtttagaatttatttgtgcgttactgctgcaaataagtatttgaacacctgtGAAAATCAATGTTAATATTTGGTACAGTAGCCTTTGTTTGGTCAAACGtttcctgttccttactagtgtggcaaaatgcaccttataatccagtgtgccttgtatatgaaaatagaccagaaaatagacgttcactgaaagtgtgccttataatctggtgcactttatagtgtgaaaatatgttatttgaggaataaaagaaaaaaatccaaataaagagagaattgtttactatgtatttattcattggAAGGGCTTTAGTGTGAAACAGTAGGAGcagagagagaatatgaaacTCACCTCTCAGAGGGTAATGGTTCATACATGAGTGGACAGAATGAGGAGAAGCGAAGCAGCGAGGCCAAAGAGTGGCTGAACACTGATGGAAAGGAAGATGAAAGGGCACAGAGGCCAGGATGATGGAGGAAGAGCGTCGGCGGTGCAAACCTTGATCAGACTGGCTCTCGGACGTCACACTGAAAGCTTGGACTGCCATCAGGGGGCGCTCATGCTGTTGGGATTGAGAAACTCCCTCAGGATGTAGACTGGATTTTACAGATACGGGCTGAGAGGCAGGGTGAGGGGACACGCTTTTAGCAGCTTCCATCTGATGTTCTGCAGTTCTTGCATAGCAGTCTttcaaagcagcagcagcagcttcagtaCTGTCTGTAGGAGACAATCTGCTGGAATGTTCTGAGACTGAGTTACTTGACCTGCCAAAGACCCGGCCCTTAGTGCTTTTAGGAGGCGGAGTCTGAGACCCACTATTGCTCAATCTGGATTCGCAGGGACCAGGCAGGGGCGTGGAAGGAGATGGCAGAAGAGGTGCAGCAGCATGAGATGGACTGGTAGGTGAGGCTGCAGGTCCTGAGCATGACGAGGCCTCACCACTAGCAACGCCCAGGTGAAGGCCATCTCCGATAGATGCAGCACGGCTGACCTTGGCTATGGAACTGGTTGTGGGGCTCATGTAGGAGCACGCTTTGGCGTGACGGTTGGTGGTAGGACTTTCCCAGGGCTGAGGAGAGGTGGAGCCTGAGGATGGGTGGTAGAGATGTCTGCTGGAATCACTTTTGGACATGATGAGCTGAGGCAACGGTGGCAGAGACTCTCGCTTCAAGCGGGACGGGGTTACAGACCTCCGatTGTCTCCTGTAAGATTTTGTGCGGACATTGATTTGAGAAGCAGTGCTGATTGCTTGCCCACTGGACTGGCCACTCTGCTGGGATGTGCCGCAAAAGCTTTCTTCCTCTTTAGCTTTGTGCACAGCTGTGGAGGATTACTCTGTGCATTCTTCTCGAAACCTGTGCTCTGACTCTTCTCCTCATGCAGGGGGCTTACTGCAGATATAAGGGGCTCAACTTCAGCACTGGGACCACTGGACATCCGGCTGGTCTTGGAGAGGAACGGGATGGGctttctaaaa

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35583 lncRNA upstream 13118 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 541366 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 551720 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 967337 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 1214621 44865143 ~ 44865684 (+) True G26286
TU35643 lncRNA downstream 272482 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 280481 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 325930 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 327028 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 396788 46480191 ~ 46480391 (+) True G26679
XM_007232827.3 mRNA upstream 3321 46069573 ~ 46076984 (+) True LOC103025099
XM_022686811.1 mRNA upstream 134473 45934474 ~ 45945832 (+) True lamp5
XM_007232815.3 mRNA upstream 154204 45802754 ~ 45926101 (+) True plcb4
XM_022668060.1 mRNA downstream 49170 46132573 ~ 46134116 (+) True LOC103030371
XM_007232836.2 mRNA downstream 77248 46160651 ~ 46178257 (+) True LOC103027027
XM_015601183.2 mRNA downstream 109626 46193029 ~ 46201498 (+) True LOC103027954
XM_007232840.3 mRNA downstream 109629 46193032 ~ 46201496 (+) False LOC103027954
XM_022686974.1 mRNA downstream 109629 46193032 ~ 46199888 (+) False LOC103027954
TU34777 other upstream 2585990 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2655399 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2658259 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2716861 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3563748 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 444992 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2194864 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2197362 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2472394 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2472394 48555797 ~ 48641905 (+) False G26995

Expression Profile