RNA id: TU35643


Basic Information

Item Value
RNA id TU35643
length 1839
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G26522
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46355885 ~ 46357866 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTGAACCCCAATAATTGACACCACTTTGCCATGAGCACGATAGCCAGTGTACAACCTTATTAAACAAAGTGTCAGCAGCACTCAGTAGCTGTTCCTTGAGGTAATAatcatttacatactgctatcccatgacttctggcatgtaAGTGCGTGTGTGTTAAAACAGTTAAATGAGCTAGTGAAGGCTTACTTTTTTCACTCAGTTCCTACATAAGGATCATTTTGCACACTTATAATGAAAAACAAGGAATCTTGCAGTTGACTGATCATACAGAGTCATCCATATTTTCTGTCTCTACCTGTGTGTTTTAAGGTGATACTTCAGATGTGCAGGCCAGGTAAATGTCCTGTGGCAGTTCTCATAAGGACACCTAAGAATCTTCTCTGCAGATGTACGACTGTTCCGTGGTGGTTGCTCCTTTTTTGGTGCCTCTGTCTGGTAGCTGTGAATATGGTCACCTGGGCAGCAACAGCACAGGAGATTATGATGGAGGTCTCTTTAAATATGAGACTTTCAAACTGTGcatagtgtaaaaaaatgttcaggGAGTTATCAAAAAAGACTgttataaaaaagttaaaagactGTTATTGGCTTTAACAGCAGTTCCCATTCATAGTCCTGGAGTGCCACAAAACCCACATTTTAAGTAATGAACcagaaatgcatttaaattgtTATGGGAATTATTTGTTAAGGCATCACAATATGCTCTAATTATGTTGTTGTTAATATAAACTTGCATTatttataacaaataataaatataaatctatttctaaaataaattgtaaatattATGACCGAAATAACTGTAATGGAtggaaactaaataaaaacaaatgatcTTACAATGTTTAATGAACAACAatgaattaaacaataaataataagtcGTTAAACATTACTGTTGCTACTAGCCCTGGCTTCCTTTGCCAGCTGGGCTCGGGTGGCAGCGATCAGGCTGTCGTGGGCCAACTCCTGCACCCGCAGGTACCACGGGGCGCTCCCATCTCCACACTCTCCTGCAGAAATCTCCTCCTCTGCCTCATCCACGTCATCCTGCACAAACACCAGCGGCTCCGCGGATGCTGCCAACCCTTCAGAAAGAGAATTACATTGTACTGATGTGCAATGGCAAACACATCCAATTTGGTTTCACatgcaattaataaaaaataaaaaataaactttcacATTTACATAGGGTGAACAAAGTTGCTAAATTACTTTCtaataaaccataaaaaaaaaaactcagaacaaattaaaaaacaacaaacaatttAAGCACTTAccagtattttgtgttttttcctttGATTAATGACCACCTCACAATGTTTTTACATcttattttatatgtaaactAAACCTCAACACATTCTTCACTGCTGCCCAAAGCAATGCAAAGTTTTACGAAATCAGATATACTCAGATTTATGCATGCCTTTAGCAAGGTTGAGCAGGACATAAGAGGTGCTGTCTGGTTGCTGAAGTTCCTGAAGTAGTGCCGGTGGGCTTGTCGTTGGGGAGTGAGACTGAAGCTGCACAACCAGGGGGCTTCGCTCTGGCCCAAACTCTGACAGTGATGGAGAAGCCGCATGGCTAAGAGTACTCTCTGAAGGTCTAGCTGGCTGCATATGGAGTTTTCAGAAGAGGCAAGGAGAGGTAGACACGGTGTCTTAGGGTCTGATTCCTCCAGGCCCTGGCCCAACGGTATGGAGGCGTTCTGCACAAACTCAACCAGCAGCTTTAACGAGACATAATACAGGCGTGCAGTTAAGTTACAATGACTTGCCACCCTTcttatttaacaatttaactaatttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35587 lncRNA upstream 272482 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 288698 46066888 ~ 46067187 (+) True G26476
TU35473 lncRNA upstream 816946 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 827300 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 1242917 45111185 ~ 45112968 (+) True G26322
TU35653 lncRNA downstream 6018 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 51467 46409333 ~ 46409990 (+) True G26529
TU35839 lncRNA downstream 52565 46410431 ~ 46410875 (+) True G26667
TU35860 lncRNA downstream 122325 46480191 ~ 46480391 (+) True G26679
TU35868 lncRNA downstream 153419 46511285 ~ 46514839 (+) True G26687
XM_007230706.3 mRNA upstream 3685 46341857 ~ 46352200 (+) True entpd5
XM_007230705.3 mRNA upstream 3685 46341857 ~ 46352200 (+) False entpd5
XM_007230707.3 mRNA upstream 3685 46341857 ~ 46352200 (+) False entpd5
XM_007232845.3 mRNA upstream 55761 46292008 ~ 46300124 (+) True LOC103029419
XM_007232842.2 mRNA upstream 66605 46234679 ~ 46289280 (+) True LOC103028674
XM_022687080.1 mRNA downstream 62282 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230715.3 mRNA downstream 62285 46420151 ~ 46430049 (+) False c3h14orf37
XM_007230718.3 mRNA downstream 62286 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230717.3 mRNA downstream 62286 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230719.3 mRNA downstream 98147 46456013 ~ 46460814 (+) True otx2
TU34777 other upstream 2861570 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2930979 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2933839 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2992441 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3839328 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 170529 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1920401 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1922899 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2197931 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2197931 48555797 ~ 48641905 (+) False G26995

Expression Profile