RNA id: TU35704


Basic Information

Item Value
RNA id TU35704
length 1712
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G26563
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45843174 ~ 45844931 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttggccgcgccgattttaatccggcacatctgcgggcagctacttggaacgcagcgcaaggtttcaagagtgagcaagactttcaacgggtaaggcatccatttttacaatccagtgtcccaaagtctatattttctctcatgattagtaatctgtgatgttgcttcatttactgaaaaagaatagaatttcaactgcatcggtgttgtagcatttctctccaaacgaaactatgcttagcgttgatggcaggagtgcatttggaatgcgccctgactatgcaaggcaagccctatctataagctctagtataaaataactgacgtctcttcttcagaaacgaaaatctaagtaaataaaatcaaattaacacttgatattttcagtatttaacctaatatctggctgtgtttatgaatagttataggttcaatatagacacccaatataccattttaaagcttagaatctctgcttttcagttatatagcctatttagctgtatctcctttcagacaataaacatttagggcgaaatatgccttggttatgaaaatattaaatcataattttcatatttccgtttatcggacgtccatatttgatcgaatgcggacatgttatacaccattcgaaccgtctggctctccggattccgaaACTGTGCTCCGTTTTAGTGTAGGATGtatgaattagagctgaaagagcgcgttgcagcgcgtgttcagagttgaaaaatgcACAGGTTTGGTCCTGTAACTTAGCTGCCTAAAGtcactccccccacccccccaacacccaccagcgcgtcccccactctcttaccttcaaaaagaGCCCAGACTCAAGAAAATCCATCGATCCAGTCTCctataatccacagttatatccacccCGCGCGAGGAATAATGTGAGACGGAATCTAAACTTTAATTCcgaattaaaagcattttattcgaCGCTACGCCGAATCTGGCCCACAGCCAGACAGGGCGGAGCCTACTGGACATGACGGTATGAGAATGaggtctctcagccaatcaggtggcgagctCGGCCAGCTGAAAGGCTAAGGAAGAGAGATGCTTGGCCATAGAAACTTTCTCTAAAGACTTCCCACTCAGCAGAACAACcgctcttaaagagacactgcggatttctgtttgtatatgagtagaccacacaaaaacccagagtttactgcaaaatgagttataaaagtggtagtttttattcttataaagtttccagtcctttggagaaagaaaagatcaTTACTGGTTCAAATCACTATAACTTCTAACCAGTAATAGGTAGCAGTTaaaaattttatatgatgattgtaaacacattatagtaaaatatagagctgtcaaaacacttcatccatataaatagttcattttatgtgtctgaaaaaaaaaaaaaaaaatagaaaatctgaaaagcgcctaaaaattttcctggtttttaccatattttggccattacatgttcaattgaataattaaaatgccttaaatgaattgtgtaaaggcttctaagtaatcctcctcttactagtatgattttaagcatgccaaataggtataatacgatagcatatcggccctaaaaatcggcaggtcacatcggccatcggctgactctgaccactaatgatcggtatcggcatcggccttagaaaaacccatatcggtcggtctctagA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652433.1 lncRNA downstream 100324 45733316 ~ 45742850 (-) True LOC111197418
XR_002649723.1 lncRNA downstream 239013 45597587 ~ 45604161 (-) True LOC111191909
TU35468 lncRNA downstream 433138 45408433 ~ 45410036 (-) True G26386
TU35418 lncRNA downstream 602956 45239901 ~ 45240218 (-) True G26347
TU35416 lncRNA downstream 682244 45142890 ~ 45160930 (-) True G26345
TU35706 lncRNA upstream 2686 45847617 ~ 45849592 (-) True G26564
TU35764 lncRNA upstream 221717 46066648 ~ 46067188 (-) True G26612
TU35757 lncRNA upstream 231205 46076136 ~ 46162099 (-) True G26605
TU35832 lncRNA upstream 516787 46361718 ~ 46361918 (-) True G26663
TU35837 lncRNA upstream 551030 46395961 ~ 46409064 (-) True G26666
XM_007229700.3 mRNA downstream 311781 45515195 ~ 45531393 (-) True fermt1
XM_015605195.2 mRNA downstream 314658 45515195 ~ 45528516 (-) False fermt1
XM_007229699.3 mRNA downstream 330658 45501651 ~ 45512516 (-) True trmt6
XM_022686715.1 mRNA downstream 377562 45451286 ~ 45465612 (-) False gpcpd1
XM_007232825.3 mRNA upstream 103097 45948028 ~ 46055938 (-) False pak5
XM_022686853.1 mRNA upstream 103097 45948028 ~ 46055938 (-) False pak5
XM_007232823.3 mRNA upstream 103097 45948028 ~ 46019892 (-) False pak5
XM_007232822.3 mRNA upstream 103097 45948028 ~ 46016353 (-) False pak5
XM_007232826.3 mRNA upstream 103097 45948028 ~ 46013472 (-) False pak5
TU35470 other downstream 405589 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 957373 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 972495 44867094 ~ 44870679 (-) False ubxn2a
TU35290 other downstream 1043699 44769292 ~ 44799475 (-) False fkbp1b
TU35737 other upstream 90222 45935153 ~ 45935622 (-) True G26588
TU35796 other upstream 447156 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 582486 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 673940 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 678717 46523648 ~ 46525996 (-) True G26695

Expression Profile