RNA id: TU35839


Basic Information

Item Value
RNA id TU35839
length 344
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G26667
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46410431 ~ 46410875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tTACATTTTGAAACTCTGGTTTAACAGATATAATTAGAGGCTATAATCTCTCACCTCCTAGCCAGGCAGTACAGTTGGGCTTGGCTGGTGGACTGTGAAGGCGAAAGCTCTTGGTAGCTAGAGCATCACAGTATTTGGGCTTTTCCACCAGCAAACGGATCTCAGCCAGGAGGCGGTGAAGAAAGCCAGGAAGCATGGATGTCCCGCCAATTACCAACAAGTTCTCAGAAAGAACCTTCCTTGTATCAATAGGACACTAACAAGAGTATCAAGGATTAATGTAGCAATAGATTTTTCTTCGTTGTCCTGTTCAAACAACATCTCAGCAATTGAGTCTCTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35653 lncRNA upstream 441 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA upstream 441 46409333 ~ 46409990 (+) True G26529
TU35643 lncRNA upstream 52565 46355885 ~ 46357866 (+) True G26522
TU35587 lncRNA upstream 327028 46080305 ~ 46083403 (+) True G26477
TU35583 lncRNA upstream 343244 46066888 ~ 46067187 (+) True G26476
TU35860 lncRNA downstream 69316 46480191 ~ 46480391 (+) True G26679
TU35868 lncRNA downstream 100410 46511285 ~ 46514839 (+) True G26687
TU35894 lncRNA downstream 119648 46530523 ~ 46549553 (+) False fau
TU35895 lncRNA downstream 122933 46533808 ~ 46535925 (+) False G26705
TU35896 lncRNA downstream 122933 46533808 ~ 46534942 (+) True G26705
XM_007230706.3 mRNA upstream 58231 46341857 ~ 46352200 (+) True entpd5
XM_007230705.3 mRNA upstream 58231 46341857 ~ 46352200 (+) False entpd5
XM_007230707.3 mRNA upstream 58231 46341857 ~ 46352200 (+) False entpd5
XM_007232845.3 mRNA upstream 110307 46292008 ~ 46300124 (+) True LOC103029419
XM_007232842.2 mRNA upstream 121151 46234679 ~ 46289280 (+) True LOC103028674
XM_022687080.1 mRNA downstream 9273 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230715.3 mRNA downstream 9276 46420151 ~ 46430049 (+) False c3h14orf37
XM_007230718.3 mRNA downstream 9277 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230717.3 mRNA downstream 9277 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230719.3 mRNA downstream 45138 46456013 ~ 46460814 (+) True otx2
TU34777 other upstream 2916116 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2985525 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2988385 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3046987 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3893874 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 117520 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1867392 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1869890 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2144922 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2144922 48555797 ~ 48641905 (+) False G26995

Expression Profile