RNA id: TU35860


Basic Information

Item Value
RNA id TU35860
length 201
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G26679
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46480191 ~ 46480391 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTATCTCCGCTCAAAGATGATTCTTAAAATGATTGAGTAAGCATCATGACCTTAACACCAAGATACAACAGTGATAAATTGGCATAGTTATGTagcattacatttaaaaataaattagagaCGGGATCTATGTTATAATTCTTTCCTTTTGGGTTACATGATCTTGAAGAATTTTCAGGTACTTTGTATTACTTTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35839 lncRNA upstream 69316 46410431 ~ 46410875 (+) True G26667
TU35653 lncRNA upstream 70201 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA upstream 70201 46409333 ~ 46409990 (+) True G26529
TU35643 lncRNA upstream 122325 46355885 ~ 46357866 (+) True G26522
TU35587 lncRNA upstream 396788 46080305 ~ 46083403 (+) True G26477
TU35868 lncRNA downstream 30894 46511285 ~ 46514839 (+) True G26687
TU35894 lncRNA downstream 50132 46530523 ~ 46549553 (+) False fau
TU35895 lncRNA downstream 53417 46533808 ~ 46535925 (+) False G26705
TU35896 lncRNA downstream 53417 46533808 ~ 46534942 (+) True G26705
TU35903 lncRNA downstream 103632 46584023 ~ 46623216 (+) True G26710
XM_007230719.3 mRNA upstream 19377 46456013 ~ 46460814 (+) True otx2
XM_022687080.1 mRNA upstream 50142 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230715.3 mRNA upstream 50142 46420151 ~ 46430049 (+) False c3h14orf37
XM_007230718.3 mRNA upstream 50142 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230717.3 mRNA upstream 50142 46420152 ~ 46430049 (+) False c3h14orf37
XM_007230723.2 mRNA downstream 38722 46519113 ~ 46525826 (+) True prpf39
XM_007230724.3 mRNA downstream 47977 46528368 ~ 46530912 (+) False fau
XM_015607871.2 mRNA downstream 48005 46528396 ~ 46530912 (+) False fau
XM_007230725.3 mRNA downstream 48032 46528423 ~ 46530912 (+) True fau
XM_022687128.1 mRNA downstream 48092 46528483 ~ 46530912 (+) False fau
TU34777 other upstream 2985876 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3055285 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3058145 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3116747 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3963634 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 48004 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1797876 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1800374 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2075406 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2075406 48555797 ~ 48641905 (+) False G26995

Expression Profile