RNA id: TU35868


Basic Information

Item Value
RNA id TU35868
length 3229
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G26687
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46511285 ~ 46514839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGTTTTCCTTTCGTGTTGCCCCATAGTATTCATTAGACAGCATTAAGTTAATCATCCAAGGCCGCCTTCAATATTGATACATTGAAAGAAAGATTAAAGGCAGTTTAACTGGGCTTGTTTAGAGAGAAGTGCCAACATGCTGTATACATGTCTGGGATTACACTGAGCGATACTGTAAATCTTTTCACAAACCTTCTACAAGTGAACCACCAGATACCTTCAATTCTTTAACCACACCTCTCAAACACTTCACATCAGATGAGTCATAGCACACAAACACTTAACCAATACTATGAGTGCTTCACTACCTTTCAAAATGATGCTGGTTAATAGTGAATTTCTGTTATACATGAAAAAGTACATGTATAATATTTTCAAGTTCAAGAAGCagcaatttctttatttaactgtatatatttttttatttatcagctTAACAAATTggtcaaaaaaattaaacaaagcaTTTGTTAATTTAAGACAAAATTAAGCTACCAGCTTTGAGCATGACTGTGCAGCTGATGAGTGTTGTACTCTCAGAGCGGAATCTAGAGCACCGTGGAAGAGCCAGATGATTGAGAGGAGTGGGGTTTAGTAAACACTTTCTGGCATTCAAAGTTAGTCCAGAATCACTCACTTTAGTCACAGGGCCCGTGTCCTCACTCTCCCCAAAAGACAACTTTACTGGTAATTTCCTAACTGTGATGTCTGCACAGCTCATTGACTCATCCCTTGTGAAACACCTCTAGTTTGTGCCTCCCCAAGAAGAGACCAAACAACATTAATACTCGAATACAGCCCCACCCTGGAAAGGCAAAGTTAAGACTAACAGACTGGGAGACTATTTTTGAACATGAATGCTGGACTTGATGGAATTATGCATTAGTTTCTTGTCTGAGCACATTGCTGGTTTCTCTGTTCACTTTTGCTTGTGTGTGACACAATGAAAGTTGAATAGGGGTTAGCAGATACGTTGCCATTTCTGAGAAACATGTGGATAACATAACTGAAGAGAGAGTCTATGGAGTGCGAGTGAGTCAGTAAAAAAGATAATGGAAACAAAAACCGGGCTTGTAAGAATGTAAAATGCAAACATAATAGCAAAAAACAACAAGAGTGCCTTAGTTGAAAGGAAAATCAGGAGCAATTAAAAAGTTttcaatggtttaaaaaaaattacacctCCATAATACCTTCAAAACAATACTTTATGTAATATTGTGAGATGGTAGTTGTCATTTAGAATTATAATAGTGCCAAAGCAAATGTAAGAGCCAGCTGAGAGGATTGGTACAGtatagaaaagagaaaaaaaaacattacagggAGTCATCAAAATTAACAAGATTATAATCAAACTTCTTTTTGCTGACTGATTTGAGAAGCAAAGTTATTTGTTAAatcttcagtttcattgttttttttttcttctttttttctcttttgcacTGACCAGTTCAACTGAACAGTACATTAAGATTTATAATTTGAAGTGAGCCAAGTCAGCCCCTCATACAGTCCATCACCTGTCGTGGCACAAGAGGGTTGAACGTACCAATTTCTATCTCGAATGCGGGTCAACCCGAGCTTCTCTTGGATCTCGTGGGGTTTCATTGCATCAGGAAGGTCTTGCTTGTTGGCGAAGATCAAGATGATCGCATCCCTCATTTCTCGGTCGTTGATGATGCGGTGCAGCTCCTGTCGAGCCTCATCAATGCGATCTCTGTCAGCACAGTCCACCACAAAGATGAGCCCCTGAGTGCCTGTGTAGTAGTGCCGCCACAGGGGTCTGATCTTGTCCTGTCCGCCCACATCCCACACGTTAAACTTAACATTCTTATAGGTGACCGTTTCCACATTGAAACCGACGGTTGGGATAGTGGTGACGGACTGTCCGAGTTTCAGTTTGTAAAGGATTGTGGTCTTGCCGGCTGCGTCAAGTCCAAGCATCAATATTCTCATCTCTTTGTTGCCGAAGATTTTTGAAAGCATTTTCCCCATCTTGTTGGCTGTGCATATATTATGGTTATTagggagaaaagagagggaCGGTCCAGGCTTCTTTGGGTGGTTATGTACCTTTGGCGAGGTTATGTGCTACTTTAATACTTGTCTTTTTTGGATGTAACACCACAATGCTTTAGATAGAGATACTGTAACAGAAATAGAATATTGCTTGAGTACAAACAGTAGTAACACTCTTCAATGGCTGAGGAACGAGACAGGCTGTGTTGTCACCAAATGAAGGATGAAAAAAAGAGGAGGACAACACCTTCTCATTGGTTTAGCACAGTTCTTTTAGACGAATGAGTGAAACACATGAGagaagaacaaacaaacaaaccacacGAAgtttgaagaaaaagaaaaaacgtgCTCAGCAGAGGGTGTGGATTAGCAGCCTTATTTAACCTGTCTCCTCAGAGTGCTGCTGGTAGCTCAACAAAAGGGGCACCTTTTGTTTATTTGGTGTCAGCTGGCCAAGGGTAGGTCCTTCAGGTCCACTCTCAGGCTGGGTGCAGGGCTGCTGCTGAGACAGCGTGGGCTATCGTAGACTTGAGATTAGAAGCTGCGGCGCTTGAGCAGGCCCTCTCGACAGTCCGCAGCAGTAGTTCAGACTTCCTTCTTGTAGTATAGCTGGTGGAGTGCCGGCTGTCCCCCGCGCTCTATCCGGCGCGCTCGAGCGGCGGGATCCGCTTCAGGAGGAGTTCATGCCCACGAATACGGTCTTTAATGGCGAACCAGAGGAGCGGAGTCTGAAGAAAAGCGCCCGGGAGAACTCCAGAGGTCATTGATTCCTTCGAGTTTCcgtcctcccctctctctctcttctctcctcacccttcaaaacgcggcGGTCGCTCCCCCGCTCCCCagacctcctctctctctctttctcttcccctctccgagtctctctctctctctgagccgCGGTGGAGCTGTGTTACCGGAAAAGGTGCGGACCTGCTTCACCCGCCACTTCCTCTGCTCACAGCAGCAGCGCTCTCCAGCGTCCAGCCCAGAGAAGCGCCCGCCATACAGATAACACTACTGCAGCTACCCCGAGTTTCCGCTGTTTATAACAGACAAAAAACTGCAGCGGAGCCGAGCTCTAAACACACGGTATAAACCAACCGGTGATGTGGAGTTTTAACGCTGAACAAAAAGCGATAAAAGaggattttttaaaacacatttacaccagagcggagggggggaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35860 lncRNA upstream 30894 46480191 ~ 46480391 (+) True G26679
TU35839 lncRNA upstream 100410 46410431 ~ 46410875 (+) True G26667
TU35653 lncRNA upstream 101295 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA upstream 101295 46409333 ~ 46409990 (+) True G26529
TU35643 lncRNA upstream 153419 46355885 ~ 46357866 (+) True G26522
TU35894 lncRNA downstream 15684 46530523 ~ 46549553 (+) False fau
TU35895 lncRNA downstream 18969 46533808 ~ 46535925 (+) False G26705
TU35896 lncRNA downstream 18969 46533808 ~ 46534942 (+) True G26705
TU35903 lncRNA downstream 69184 46584023 ~ 46623216 (+) True G26710
TU35910 lncRNA downstream 147298 46662137 ~ 46663431 (+) True G26717
XM_007230719.3 mRNA upstream 50471 46456013 ~ 46460814 (+) True otx2
XM_022687080.1 mRNA upstream 81236 46420148 ~ 46430049 (+) True c3h14orf37
XM_007230723.2 mRNA downstream 4274 46519113 ~ 46525826 (+) True prpf39
XM_007230724.3 mRNA downstream 13529 46528368 ~ 46530912 (+) False fau
XM_015607871.2 mRNA downstream 13557 46528396 ~ 46530912 (+) False fau
XM_007230725.3 mRNA downstream 13584 46528423 ~ 46530912 (+) True fau
XM_022687128.1 mRNA downstream 13644 46528483 ~ 46530912 (+) False fau
TU34777 other upstream 3016970 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3086379 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3089239 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3147841 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3994728 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 13556 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 1763428 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1765926 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2040958 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2040958 48555797 ~ 48641905 (+) False G26995

Expression Profile