RNA id: TU35894


Basic Information

Item Value
RNA id TU35894
length 294
lncRNA type sense_over
GC content 0.52
exon number 3
gene id fau
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46528368 ~ 46549553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTTGGTTCTGACATGTGCTTtattctcttttcctctttcagGTAAGGTACACGGTTCCCTTGCTCGTGCCGGTAAAGTACGAGGACAGACGCCCAAGGTGGACAaacaagagaagaagaaaaagaagaccgGCCGTGCTAAGCGCCGCATTCAGTACAACCGTCGCTTTGTAAATGTGGTGCCCACCTTCGGAAAGAAGAAGGGTCCCAATGCCAACTCCTAAATAGTTATGGAGAAACTTGTTCATAATAAACTTGCAGTTTgaacaaaatttaaaaaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35868 lncRNA upstream 15684 46511285 ~ 46514839 (+) True G26687
TU35860 lncRNA upstream 50132 46480191 ~ 46480391 (+) True G26679
TU35839 lncRNA upstream 119648 46410431 ~ 46410875 (+) True G26667
TU35653 lncRNA upstream 120533 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA upstream 120533 46409333 ~ 46409990 (+) True G26529
TU35903 lncRNA downstream 34470 46584023 ~ 46623216 (+) True G26710
TU35910 lncRNA downstream 112584 46662137 ~ 46663431 (+) True G26717
TU35919 lncRNA downstream 198937 46748490 ~ 46769667 (+) True G26725
TU35965 lncRNA downstream 462811 47012364 ~ 47012698 (+) True G26762
TU35969 lncRNA downstream 539984 47089537 ~ 47094913 (+) True G26766
XM_007230723.2 mRNA upstream 4697 46519113 ~ 46525826 (+) True prpf39
XM_007230719.3 mRNA upstream 69709 46456013 ~ 46460814 (+) True otx2
XM_022687080.1 mRNA upstream 100474 46420148 ~ 46430049 (+) True c3h14orf37
XM_007255388.3 mRNA downstream 565899 47115452 ~ 47119014 (+) True LOC103044458
XM_022661980.1 mRNA downstream 589996 47139549 ~ 47200208 (+) True tbc1d32
XM_022662004.1 mRNA downstream 843694 47393247 ~ 47590416 (+) True man1a1
XM_022668066.1 mRNA downstream 1368793 47918346 ~ 47926402 (+) True LOC103032605
XM_007255380.3 mRNA downstream 1390884 47940437 ~ 48196501 (+) True fam184a
TU35893 other upstream 136 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 3036208 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3105617 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3108477 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3167079 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 1728714 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1731212 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2006244 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2006244 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 2041396 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile