RNA id: TU35965


Basic Information

Item Value
RNA id TU35965
length 335
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G26762
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47012364 ~ 47012698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtacaatattggtctttacagggtcagatttgttccctctgaagtacaaagtcatttctaacagcaataagtacaaatttgtaccatttaaccagccaaagggtacattcagtattctgcatcactgtactaataaacaatatatattttaattgcacattttttatttgaaagccagacaattttggatcatcaagtttttgagccatatttagttgatgataatgtttataatctttatgatctttactgccacaaaaaccatgggtacaaaaaaggactttcactgaaaggtacttttttgtgcctcaatataaggtacagccccagcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35919 lncRNA upstream 242697 46748490 ~ 46769667 (+) True G26725
TU35910 lncRNA upstream 348933 46662137 ~ 46663431 (+) True G26717
TU35903 lncRNA upstream 389148 46584023 ~ 46623216 (+) True G26710
TU35894 lncRNA upstream 462811 46530523 ~ 46549553 (+) False fau
TU35969 lncRNA downstream 76839 47089537 ~ 47094913 (+) True G26766
TU35973 lncRNA downstream 92722 47105420 ~ 47106322 (+) True G26770
TU36048 lncRNA downstream 337930 47350628 ~ 47350899 (+) True G26827
TU36080 lncRNA downstream 654715 47667413 ~ 47670470 (+) True G26857
TU36086 lncRNA downstream 659278 47671976 ~ 47672187 (+) True G26860
XM_007230724.3 mRNA upstream 481452 46528368 ~ 46530912 (+) False fau
XM_015607871.2 mRNA upstream 481452 46528396 ~ 46530912 (+) False fau
XM_007230725.3 mRNA upstream 481452 46528423 ~ 46530912 (+) True fau
XM_022687128.1 mRNA upstream 481452 46528483 ~ 46530912 (+) False fau
XM_007230723.2 mRNA upstream 486538 46519113 ~ 46525826 (+) True prpf39
XM_007255388.3 mRNA downstream 102754 47115452 ~ 47119014 (+) True LOC103044458
XM_022661980.1 mRNA downstream 126851 47139549 ~ 47200208 (+) True tbc1d32
XM_022662004.1 mRNA downstream 380549 47393247 ~ 47590416 (+) True man1a1
XM_022668066.1 mRNA downstream 905648 47918346 ~ 47926402 (+) True LOC103032605
XM_007255380.3 mRNA downstream 927739 47940437 ~ 48196501 (+) True fam184a
TU35893 other upstream 481977 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 3518049 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3587458 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3590318 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3648920 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 1265569 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1268067 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 1543099 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 1543099 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 1578251 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile