RNA id: TU35969


Basic Information

Item Value
RNA id TU35969
length 2828
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G26766
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47089537 ~ 47094913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACACATCAAATATTACAAAGAAAAAATCTTTATTggttaaaatagctttttttcacagatttgattaatgactttttttttgctatcaTGCACTTGGACACTGTACAACAGTGGATTCCCATGGAATGACATTTCGTAACTCTCTTTTTCAAACAAATGTACAACCTTTTTATTGCTTTGTTAAGTGAATGCTAGATCTCGCTTTGGTGCATCAagatccagaaaaaaaacaagagttcACATGAAAACGCTGCTTTTAGTGTAGTTCTACTTCTGCTTGGTGTGTGGTAAAATAAATTAGTTCCTTGCACAACAGAGAGAACATTTGCCACTTACGCATCATACGACATCCTTGCCAAAATCTCAGTGCAAACACCATtgtagctgaaaaaaaaagtccatgAACTTCCAAGTTCGAGTACCGATATGCTACGATGTAAAGTTTTGCAATAGAAACACTAAAATGTCCAAATTGAAATTATATCTACTAGTGTTTGGTAGTTGTGGAGCTACATTGGCATatatcttttaatttaattgactAAATATTAGTCCAGCTCTAACAAGCAGTCTTCTAAAAACTCACATTTGTGACAGTTAGCTTGATTTACAGTACTAAAACTCTATCTCTCAAGCAGCATGATTACattgacttaaaaaaagaacactcaCTCCAagggtaaaacaaaaaaaaaactaacttatACTGCCCTCCTCTCCcattcaaataaacaaataaggaaaaaatGACATACTTAAAAAGGAGAAATAAAGCCTTTCTCTcaaagagttaaaaaatcaGATACTTCTACCCACACCaatataacaaacacaaaataatcaAACTAACACCACATAGATTCAAAGTTTATCAGGAAAACGACAgtccactgtgattaataaaagaacCTCTTGTTAATAGACGTATTGCTGAAATTTGGATAATTGTCAATAAATATGCAATTGATTCTGGTGACTTCTATGTGTATGTGACCTTGGATAGTAGTCAATCGTCTAGTGGTGGATATCCTGTAttcttaatgaataaataaatattaattcatGAACATCAGCACTAGGAACTGCTCAGGACCCTGTTTGATTAGATGGTGTTGAGATGGTCATAGAGATGAGGAACATGATGTGGATGAGTGTAGTAATGGGGTAAAGTGTGGTTCTGGAATAGTGGGGTGTTTTAAATGGAATGTCACTGTGTGGCTGTAGAACAATTCATGAAAAACCAATCACATATCACCAAGGCATATTTTTCCAGGAGATAAAATGCAGGACTGTCAGGAAGTGAAGCGAACACGCTCATGGcccctcaccccccccccccccagctgTTCAGCTTGTTAAGGCAATGTTAGCGCCACTAGTTTCAACGTCATCATTAATTAACAAATAGTACCTCCAGCAGTGTGAGTAAATTTAAGTCTCTGAGTCTAGAGTGAGGATGACCACAACTGGACAGCTGTCTGTCCCCTCTGTGCTCTGAGTGTCAGTACTCTAGCTAGACGTCCAGGTCGTCCGGCCTTGCCCGACTGCTCATGCGGCTGCTAGCTCGGCTGCATGGCCGTGGATCCATCAGGGCCAGGGGCTGTAGCTCGTGGCCCGGCGTAATTTTCTTGTGCTCTTGCGTATCGTCGGGGTAGTCGAAGGCTTGGGCGTGCGAGTTAGAAATGGTGCTGCCATTCTGGCCTAGCCGGTTTTGCTCGGTGCTGTAGTTGGCCCAGTTTTGCTCATTGGCCTGCTTGTTGTAGTTGCGGCAAGAGTTGGTCCTTTCACCGGTGGCTAGCTTGTAGCCTGGGGGTGACATGGGTGACAGCGGCGCCGTGGGCGAGGAACATCCGTTGTAGTAAGCGTACTTGGTGGTGGACAACTCCTTGGGCGTGGGACTCAGGGTGCCACCGGATGGGTAAGTGTTCTGTTTGCCCTTGACGCGGTCCTTGATCCGCTTGAAGAACACATAGAAGAGCTCGATGACATTGAGAAGCAGGGAGACCAGCGAGACCACCaacatgaaaataataaagacaGTCTTTTCCGTGGGCCTGGACAAGAAGCAGTCCACCCTGTGAGGACATGGCGAGCGCTCACAGGTGTACACAGTAGACAGGCTGAAGCCATAGATGTACCACTGGATCACCAGGAAGCCGATCTCAAAGAGAGACTTGAAGAGGATGCTGACCACGTACGTGCGCAACAGTGCCCCCTTCATCTTCACCTTGCCATGCTCCTCCAGGCCGTGCTTGAACTTCTTCAGCTCAATCTTCTTCAGAGGAACGTCCACGTCCCCGCCGTCATTCTGCACGGCCTTCAGCTCTTCCTCCTTGCGGTTGAGCTTCTGCTCCTTGCGCATGAGGTAGAAGACATGCGCCAGGTACAGGAGCGTGGGCGTGGACACGAAGATGATCTGAAGCACCCAGAAGCGCACGTGTGAGATGGGGAACGACTTGTCGTAGCACACATTCTCGCAACCAGGCTGCTGGGTGTTGCACTTGAAGGCCGACTGTTCGTCACCCCAGGCCGACTCCACAGCTGTTCCCAGGACCAGGATCCGGAAGATGAAGAGAACTGAGAGCCAGACCTTCCCTCCTGCTGTGGAGTACGCCTGCACCTTGTCAAGGAGCCTTCCCAAAGCGCTCCAGTCACCCATCTTGGGGGTGTTCTGGCTGGAGTCACCGAGAAGCAGAAGAGAGTCCTGAGGGACTTTCTCCGTCACTTCTGTAGAGCTCACACCGCTTTCTCCCAAATCCTGCTCGGGGGGACCAAGAGAAACTGAGGCACACTTGTCAAACTTTCCTCGCTTATAAGAGACTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35965 lncRNA upstream 76839 47012364 ~ 47012698 (+) True G26762
TU35919 lncRNA upstream 319870 46748490 ~ 46769667 (+) True G26725
TU35910 lncRNA upstream 426106 46662137 ~ 46663431 (+) True G26717
TU35903 lncRNA upstream 466321 46584023 ~ 46623216 (+) True G26710
TU35895 lncRNA upstream 553612 46533808 ~ 46535925 (+) False G26705
TU35973 lncRNA downstream 10507 47105420 ~ 47106322 (+) True G26770
TU36048 lncRNA downstream 255715 47350628 ~ 47350899 (+) True G26827
TU36080 lncRNA downstream 572500 47667413 ~ 47670470 (+) True G26857
TU36086 lncRNA downstream 577063 47671976 ~ 47672187 (+) True G26860
TU36087 lncRNA downstream 584089 47679002 ~ 47681080 (+) True G26861
XM_007230724.3 mRNA upstream 558625 46528368 ~ 46530912 (+) False fau
XM_015607871.2 mRNA upstream 558625 46528396 ~ 46530912 (+) False fau
XM_007230725.3 mRNA upstream 558625 46528423 ~ 46530912 (+) True fau
XM_022687128.1 mRNA upstream 558625 46528483 ~ 46530912 (+) False fau
XM_007230723.2 mRNA upstream 563711 46519113 ~ 46525826 (+) True prpf39
XM_007255388.3 mRNA downstream 20539 47115452 ~ 47119014 (+) True LOC103044458
XM_022661980.1 mRNA downstream 44636 47139549 ~ 47200208 (+) True tbc1d32
XM_022662004.1 mRNA downstream 298334 47393247 ~ 47590416 (+) True man1a1
XM_022668066.1 mRNA downstream 823433 47918346 ~ 47926402 (+) True LOC103032605
XM_007255380.3 mRNA downstream 845524 47940437 ~ 48196501 (+) True fam184a
TU35893 other upstream 559150 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 3595222 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 3664631 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 3667491 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 3726093 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 1183354 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 1185852 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 1460884 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 1460884 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 1496036 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036056 False 2917 mRNA 0.45 2 NC_007131.7 40715163 ~ 40720521 (-)