RNA id: TU36089


Basic Information

Item Value
RNA id TU36089
length 593
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G26863
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47681169 ~ 47681761 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttaaattagaatatctttgaaaagttactttatttcagtaattcagttcaaaatgtgaatctcatatattatatagatgtattaaacacagagtgatctattttaagcgttcatttcttttattgttgatgattatgaagcttacagccaatgaaaacccaaaaatcagtgtctcagaaaatgagaatattatataagaccaactgataattttggcagcattttgctaagtcctgctggaaaatgaaatctgcatctccataaaagctctCAGCAGAGgtaagcatgaagtgctgtaagattttgctggaaaacaaaactgcactgactttggacttgataataaaacacagtggatcaacagcagcaggtcacatgtctctccaaaccatcactgattggtggaaactccACACTaccctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtgaaatttactcATGATCAGTGATcagcaacaataaaagaaataaacacttaaaatagatcactctgtgtgtaatatatctatataatatatgagtttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36085 lncRNA downstream 10707 47667957 ~ 47670462 (-) True G26859
TU36068 lncRNA downstream 84698 47586130 ~ 47596471 (-) True G26847
TU36067 lncRNA downstream 111882 47435445 ~ 47569287 (-) True G26846
TU36070 lncRNA downstream 218231 47462293 ~ 47462938 (-) True G26849
XR_002648454.1 lncRNA downstream 297101 47380842 ~ 47384068 (-) True LOC111188267
TU36094 lncRNA upstream 15620 47697381 ~ 47697580 (-) True G26868
TU36115 lncRNA upstream 205990 47887751 ~ 47889346 (-) True G26888
TU36184 lncRNA upstream 530334 48212095 ~ 48212979 (-) False G26944
TU36186 lncRNA upstream 530334 48212095 ~ 48215258 (-) True G26944
TU36189 lncRNA upstream 530334 48212095 ~ 48212979 (-) False G26944
XM_007255385.2 mRNA downstream 541851 47134735 ~ 47139318 (-) True hsdl1
XM_007255529.3 mRNA downstream 546868 47129070 ~ 47134301 (-) True LOC103033231
XM_007255386.3 mRNA downstream 552387 47126477 ~ 47128782 (-) True LOC103043748
XM_007255389.3 mRNA downstream 556699 47122168 ~ 47124470 (-) True LOC103044766
XM_007255387.3 mRNA downstream 579538 47096096 ~ 47101631 (-) True LOC103044065
XM_022662076.1 mRNA upstream 596507 48278268 ~ 48288710 (-) True pln
XM_022662065.1 mRNA upstream 596507 48278268 ~ 48288708 (-) False pln
XM_022662069.1 mRNA upstream 600722 48282483 ~ 48288708 (-) False pln
XM_007255373.3 mRNA upstream 631270 48313031 ~ 48324662 (-) True LOC103039734
XM_022662051.1 mRNA upstream 644124 48325885 ~ 48446366 (-) True slc35f1
TU35957 other downstream 942433 46704347 ~ 46738736 (-) True G26754
TU35943 other downstream 1145416 46533695 ~ 46535753 (-) True fkbp3
TU35877 other downstream 1155173 46523648 ~ 46525996 (-) True G26695
TU35879 other downstream 1159926 46518871 ~ 46521243 (-) False G26695
XR_001518806.2 other downstream 1245244 46427417 ~ 46435925 (-) False naa30
TU36479 other upstream 1205233 48886994 ~ 48891028 (-) True G27145
XR_002649726.1 other upstream 1753151 49434912 ~ 49435653 (-) True LOC111191920
TU36629 other upstream 1956998 49638759 ~ 49639444 (-) True G27258
TU36630 other upstream 1956998 49638759 ~ 49639444 (-) False G27258
TU36802 other upstream 2800128 50481889 ~ 50531639 (-) True G27400

Expression Profile