RNA id: TU36090


Basic Information

Item Value
RNA id TU36090
length 318
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G26864
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47681924 ~ 47682241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTGTTATGAGCACTGTATACCATCCTTGTTGTGGAAGCACTTTTTTGTACAatattcagaagaaacaatgaaccaTTGCACTAGAAGAGTTTGtattgcttttgttggagtagctgATTCTACTTTGAAGTGAAGGCTTTCTACAATATTTTAGAGCACTGCTGTGGGgaattgattgcatttagctacaagaacattagtgaggtcaggaggTTAAATGATCACCACCACACCTCAGCCCAACGTATCACACATAAATGAAGCATCATCatttccagagaacacaggttTGTCCTCTTTTTTCTGTCCATTCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36088 lncRNA upstream 212 47681193 ~ 47681712 (+) True G26862
TU36087 lncRNA upstream 844 47679002 ~ 47681080 (+) True G26861
TU36086 lncRNA upstream 9737 47671976 ~ 47672187 (+) True G26860
TU36080 lncRNA upstream 11454 47667413 ~ 47670470 (+) True G26857
TU36048 lncRNA upstream 331025 47350628 ~ 47350899 (+) True G26827
TU36093 lncRNA downstream 15101 47697342 ~ 47697580 (+) True G26867
TU36098 lncRNA downstream 70393 47752634 ~ 47752866 (+) True G26872
TU36117 lncRNA downstream 226450 47908691 ~ 47931951 (+) True G26890
TU36145 lncRNA downstream 529896 48212137 ~ 48212982 (+) True G26910
TU36150 lncRNA downstream 596026 48278267 ~ 48315894 (+) False G26915
XM_022662004.1 mRNA upstream 91508 47393247 ~ 47590416 (+) True man1a1
XM_022661980.1 mRNA upstream 481716 47139549 ~ 47200208 (+) True tbc1d32
XM_007255388.3 mRNA upstream 562910 47115452 ~ 47119014 (+) True LOC103044458
XM_007230725.3 mRNA upstream 1151012 46528423 ~ 46530912 (+) True fau
XM_022668066.1 mRNA downstream 236105 47918346 ~ 47926402 (+) True LOC103032605
XM_007255380.3 mRNA downstream 258196 47940437 ~ 48196501 (+) True fam184a
XM_007255382.3 mRNA downstream 258865 47941106 ~ 48196539 (+) False fam184a
XM_022678324.1 mRNA downstream 518695 48200936 ~ 48219344 (+) True mcm9
XM_007255378.3 mRNA downstream 550029 48232270 ~ 48311540 (+) False cep85l
TU35893 other upstream 1151537 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 4187609 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 4257018 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 4259878 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 4318480 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 596026 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 598524 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 873556 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 873556 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 908708 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile