RNA id: TU36098



Basic Information


Item Value
RNA id TU36098
length 233
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G26872
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47752634 ~ 47752866 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ccagtcttcctctgtccaatgtctgtgttcttttgcccatcttaatctttttcctttattagccagtctcagatatggctttttctttgccactctgccctgaagcccaaaatcccgcagccgcctcttcactgtagatgttgacactggtgttttgcgggtactatttaatgaagatgccagttggggacctgtgaggcgtctgtttctcaaactagagactctaatgtact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36093 lncRNA upstream 55054 47697342 ~ 47697580 (+) True G26867
TU36090 lncRNA upstream 70393 47681924 ~ 47682241 (+) True G26864
TU36088 lncRNA upstream 70922 47681193 ~ 47681712 (+) True G26862
TU36087 lncRNA upstream 71554 47679002 ~ 47681080 (+) True G26861
TU36086 lncRNA upstream 80447 47671976 ~ 47672187 (+) True G26860
TU36117 lncRNA downstream 155825 47908691 ~ 47931951 (+) True G26890
TU36145 lncRNA downstream 459271 48212137 ~ 48212982 (+) True G26910
TU36150 lncRNA downstream 525401 48278267 ~ 48315894 (+) False G26915
TU36251 lncRNA downstream 665966 48418832 ~ 48450456 (+) True G26982
TU36262 lncRNA downstream 799367 48552233 ~ 48552667 (+) True G26993
XM_022662004.1 mRNA upstream 162218 47393247 ~ 47590416 (+) True man1a1
XM_022661980.1 mRNA upstream 552426 47139549 ~ 47200208 (+) True tbc1d32
XM_007255388.3 mRNA upstream 633620 47115452 ~ 47119014 (+) True LOC103044458
XM_007230725.3 mRNA upstream 1221722 46528423 ~ 46530912 (+) True fau
XM_022668066.1 mRNA downstream 165480 47918346 ~ 47926402 (+) True LOC103032605
XM_007255380.3 mRNA downstream 187571 47940437 ~ 48196501 (+) True fam184a
XM_007255382.3 mRNA downstream 188240 47941106 ~ 48196539 (+) False fam184a
XM_022678324.1 mRNA downstream 448070 48200936 ~ 48219344 (+) True mcm9
XM_007255378.3 mRNA downstream 479404 48232270 ~ 48311540 (+) False cep85l
TU35893 other upstream 1222247 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 4258319 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 4327728 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 4330588 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 4389190 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 525401 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 527899 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 802931 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 802931 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 838083 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile