RNA id: TU36117


Basic Information

Item Value
RNA id TU36117
length 201
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G26890
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47908691 ~ 47931951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaaaaaaataaataaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36098 lncRNA upstream 155825 47752634 ~ 47752866 (+) True G26872
TU36093 lncRNA upstream 211111 47697342 ~ 47697580 (+) True G26867
TU36090 lncRNA upstream 226450 47681924 ~ 47682241 (+) True G26864
TU36088 lncRNA upstream 226979 47681193 ~ 47681712 (+) True G26862
TU36087 lncRNA upstream 227611 47679002 ~ 47681080 (+) True G26861
TU36145 lncRNA downstream 280186 48212137 ~ 48212982 (+) True G26910
TU36150 lncRNA downstream 346316 48278267 ~ 48315894 (+) False G26915
TU36251 lncRNA downstream 486881 48418832 ~ 48450456 (+) True G26982
TU36262 lncRNA downstream 620282 48552233 ~ 48552667 (+) True G26993
TU36263 lncRNA downstream 620898 48552849 ~ 48553157 (+) True G26994
XM_022662004.1 mRNA upstream 318275 47393247 ~ 47590416 (+) True man1a1
XM_022661980.1 mRNA upstream 708483 47139549 ~ 47200208 (+) True tbc1d32
XM_007255388.3 mRNA upstream 789677 47115452 ~ 47119014 (+) True LOC103044458
XM_007230725.3 mRNA upstream 1377779 46528423 ~ 46530912 (+) True fau
XM_007255380.3 mRNA downstream 8486 47940437 ~ 48196501 (+) True fam184a
XM_007255382.3 mRNA downstream 9155 47941106 ~ 48196539 (+) False fam184a
XM_022678324.1 mRNA downstream 268985 48200936 ~ 48219344 (+) True mcm9
XM_007255378.3 mRNA downstream 300319 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA downstream 308765 48240716 ~ 48311540 (+) True cep85l
TU35893 other upstream 1378304 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 4414376 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 4483785 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 4486645 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 4545247 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 346316 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 348814 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 623846 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 623846 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 658998 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile