RNA id: TU36145


Basic Information

Item Value
RNA id TU36145
length 372
lncRNA type intronic
GC content 0.50
exon number 3
gene id G26910
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48212137 ~ 48212982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taggtggttgctagggtgttgctaggtggttgctatggtgttgctaggcggttgctaaggtgttgctatggtatccagggtggttgctatggtgttgctaagtggttggtaggtcactcctaagcagttgctaggtggttgctaaggtgttgctatggtatccggggtggttgctatggtgtttctaggtggttgctaggtgattgctaggtggttgctaaggtgttgctaggtggttgctaaggtgttgctatggtatccagggtggttgctatggtgttgctaagtggttggtaggtcactcctaagcagttgctaggtggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36117 lncRNA upstream 280186 47908691 ~ 47931951 (+) True G26890
TU36098 lncRNA upstream 459271 47752634 ~ 47752866 (+) True G26872
TU36093 lncRNA upstream 514557 47697342 ~ 47697580 (+) True G26867
TU36090 lncRNA upstream 529896 47681924 ~ 47682241 (+) True G26864
TU36088 lncRNA upstream 530425 47681193 ~ 47681712 (+) True G26862
TU36150 lncRNA downstream 65285 48278267 ~ 48315894 (+) False G26915
TU36251 lncRNA downstream 205850 48418832 ~ 48450456 (+) True G26982
TU36262 lncRNA downstream 339251 48552233 ~ 48552667 (+) True G26993
TU36263 lncRNA downstream 339867 48552849 ~ 48553157 (+) True G26994
TU36266 lncRNA downstream 349622 48562604 ~ 48567294 (+) True G26996
XM_007255382.3 mRNA upstream 15598 47941106 ~ 48196539 (+) False fam184a
XM_007255380.3 mRNA upstream 15636 47940437 ~ 48196501 (+) True fam184a
XM_022668066.1 mRNA upstream 285735 47918346 ~ 47926402 (+) True LOC103032605
XM_022662004.1 mRNA upstream 621721 47393247 ~ 47590416 (+) True man1a1
XM_022661980.1 mRNA upstream 1011929 47139549 ~ 47200208 (+) True tbc1d32
XM_007255378.3 mRNA downstream 19288 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA downstream 27734 48240716 ~ 48311540 (+) True cep85l
XM_022662058.1 mRNA downstream 328553 48541535 ~ 48565601 (+) True amd1
XM_022678326.1 mRNA downstream 365821 48578803 ~ 48618075 (+) True LOC103035773
XM_022678336.1 mRNA downstream 407748 48620730 ~ 48621912 (+) True LOC111194359
TU35893 other upstream 1681750 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 4717822 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 4787231 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 4790091 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 4848693 43360469 ~ 43363444 (+) True rps29
TU36151 other downstream 65285 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 67783 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 342815 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 342815 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 377967 48590949 ~ 48604905 (+) False LOC103035773

Expression Profile