RNA id: TU36262


Basic Information

Item Value
RNA id TU36262
length 435
lncRNA type intronic
GC content 0.29
exon number 1
gene id G26993
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48552233 ~ 48552667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactagtgctggacgatatggcaaaaaattatatcacgatatattccttaatttcggtcgatacgatataatttcgatatcgatataaactatataaaactatataaaatactttgaaggcctcagaaaaactgctaagaatccctgcaatggaaatctgtacactactgtctgaaatcttaaattgaagtctttaaagcctcctctcacaaaaaactgtataatactttataaataaaaaattatcagaataaatcaatgctcacttttatttgcatgtagcaaaataaaaacatgacatccctgtcaaacataaacctataacctatatgcatattaccaatataaataactttacattacaacagaggcagagcttcttattcttttgtaaacatatttaacagatcaaaacaaaagtgcttcaaccagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36251 lncRNA upstream 101777 48418832 ~ 48450456 (+) True G26982
TU36150 lncRNA upstream 236339 48278267 ~ 48315894 (+) False G26915
TU36145 lncRNA upstream 339251 48212137 ~ 48212982 (+) True G26910
TU36117 lncRNA upstream 620282 47908691 ~ 47931951 (+) True G26890
TU36098 lncRNA upstream 799367 47752634 ~ 47752866 (+) True G26872
TU36263 lncRNA downstream 182 48552849 ~ 48553157 (+) True G26994
TU36266 lncRNA downstream 9937 48562604 ~ 48567294 (+) True G26996
TU36304 lncRNA downstream 81777 48634444 ~ 48634842 (+) True G27008
TU36298 lncRNA downstream 111988 48664655 ~ 48668517 (+) True LOC111188407
XR_002648485.1 lncRNA downstream 112217 48664884 ~ 48668564 (+) False LOC111188407
XM_007255378.3 mRNA upstream 240693 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA upstream 240693 48240716 ~ 48311540 (+) True cep85l
XM_022678324.1 mRNA upstream 332889 48200936 ~ 48219344 (+) True mcm9
XM_007255382.3 mRNA upstream 355694 47941106 ~ 48196539 (+) False fam184a
XM_007255380.3 mRNA upstream 355732 47940437 ~ 48196501 (+) True fam184a
XM_022678326.1 mRNA downstream 26136 48578803 ~ 48618075 (+) True LOC103035773
XM_022678336.1 mRNA downstream 68063 48620730 ~ 48621912 (+) True LOC111194359
XM_022662038.1 mRNA downstream 97021 48649688 ~ 48654677 (+) True LOC103035465
XM_022662030.1 mRNA downstream 97029 48649696 ~ 48654677 (+) False LOC103035465
XM_007254902.2 mRNA downstream 119420 48672087 ~ 48679878 (+) True LOC103035149
TU36151 other upstream 269359 48278267 ~ 48282874 (+) True G26915
TU36153 other upstream 269359 48280765 ~ 48282874 (+) False G26915
TU35893 other upstream 2021846 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 5057918 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 5127327 43424392 ~ 43424906 (+) True G25880
TU36264 other downstream 3130 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3130 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 38282 48590949 ~ 48604905 (+) False LOC103035773
TU36385 other downstream 188547 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 768754 49321421 ~ 49333922 (+) True LOC111191919

Expression Profile