RNA id: TU36265


Basic Information

Item Value
RNA id TU36265
length 2588
RNA type TUCP
GC content 0.42
exon number 3
gene id G26995
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48555797 ~ 48641905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttatcTTGCATGAAAGCTCTTGTTGTGTCTGTGTAGATATTCTAGCTCATTCTTGCTGTGATCCTGAAGTGCATGTAGAGTTATTAAGCAGGGTGTGTGCGAGGCGTGCTCCGCCCGCCAAACACGCACGCCGCTCCCTCCCATTCCTGCAGGTGTCCCCCCTCATCCTCCACAGACAGGGTTTCCGCCCCCACTAGACGAGGGCCCTGACATGCTCAGATCCATCTCGTCCACTGTGTGGGTTAAGCTAACCTTGGCCTAGCATACTCATACAATTAGTTGGCTGTTCTATTTCACATTCCACACTTTtacacaaattactgtttaGTGACAGGTTGTTCTCTTGtgactgaattttattttttatttattttataaatataataatatttcagtTGCTGCTTCACAcagcagtcttttttttttttttttttagttttgcacCCCtggttaaaatattacatttatattgttAAGTGAGTAGATGATGATCTACCTTTCAAAAATAGGCATAGTTTCATTCAGAAATTAAAGTAGAGtggtggtgcttttttttttttagacacaaTGGATAAACATATATGtttgggaaagaaaaaaaaatagaaaaaagtaagACCACAAAAACAATAAGggatatttttcacaaaaatgatGGCAATGATTTGAAATAATATGAAGTGTAACTTTATGcctattacaaatctgatcatctTTTACTCAATTAACTATTCACaggaacatatatattttaaccagaTGTGCCTAAACAATagcacaccactgtatataatacaatatacaaaatatgttgtaataaacataaatatcagGTACAATTTACAAAACTGCACTTCACCTTTAAAAGTGCCCCACTAAGGCTTCTTTTTATgcagttctttttctttccgTCCCTTTTTATTCCGGTTGAATGTAAAAGCCATTGGGGGAACTAAAGCTGCGGCTCTGAATGTTTCAATGTAGAAGTGCTAAGAGAGGTCCTGAAAGCCCTGCGGCGATGAATGTAAGAAGACGTTACACGTGTGTGCTTGCGTTTTAGAACGTGTGAATACAGCTCTCTGCCGTCCATTGTTGCCCTCATTGTTCAGGACCCCAGGGGCTGTCCAGTGCAGTGCCAGCTTGCTCTGTGAGCTGTGCGGGCTACCCCACGCTGAATTGAAACAGTGGGACAGACACTTTGCTTAGTGCACCGATCGCACAGCaaagcatttttctttttctaaacaATGCGGTCACTCTCTCTGTACAGAATTTGGTAACCACACAATAGATGCGCACGGATCTGAGCATGCCAGGGTTCTCCCGGATCATTCCACACTTAACAGTTGCATAAAGTGccgttttattaattttattgtgcACCCACGGTTCAGACAGGGTTTTTTCCCCCCCCCAATGAATCAGTCCAAAGTGTGACTCTAttgtcaaactttttttttttttcctctttttcttttttgtttcagtCCTCTTTTGTCAAGCGAGGGAAAGATCGTGTCCCTGTGCTGAATGTGAATAGTGCTGTAGAGGTGCACTTTGGCCGTCCTATGTGTCCGCCTCAGCTTTTTTCTATAAGTGTACAGTGCTTCgtcctctctcctccctctctccaagTATTAGCCAGCATTAAGGCCCCAGTTGGGATGGTTATGGagttttttgggttttccttatgtgttcctgaACGGTACAGTGTAAAACAAATTGAGTTGATTTGATCTGAAATTTTCTTTAAATGACCGTGAAATCTGTAGATCATAATATTGTGCGGTTTAGCTCTTAAACATCCTGATGGGGGCTTTAAAAAGCCTTTTGCTGACTGGTCAGGCTCAGGCTCGCAGGCTATATACTGAGTGTAGATTAGATGGCGGTTGATGGTTTATTGGGACTTTCCAGTTGTCTTAGGAAGCCTGGActgtatgggggggggggggtttgtgTAAAGCCATATCAATGATTGTGATGATGGGTGCTGTAGTGGATGCAGTTGTTGAGGATGGTTCTTTCCTTGTTGTGGCACATCTACCCATCACTACGCCTCTCCAGCCAGAGAGCGCCAAATGAGAAGGGGTAACGCAGATGGCAGCCAGAACAGGGATATAAGTGTTCTCCGAGAACTGAAGTTCTTCAGCCCTGGTTCTGTGTTCTTTTATACCACGTGTTTGGAAATAGTTTGGGCATCTAGAAGTGCTGTTGCTATTATTGTTCCAGGGGTCAGCAAGACGGCCTCGGATTTGAGCAGGTGGTATAAAAATTTCAGGAACGTCCCCAGGGCTACAGTCGTCAGTTCTCTGACTGAAGTGTACCCGATCTACAGCTCCTTTGAGTGTGTGGTCAGGAAAGTGGTTTTTAAAGTAAGCACGGCTTCCAGGTGGACCATTTTGTTAAAGGAGGTTGCTCTGAATATGTACTGGATAAAACTGAGAATAGAGTGGTCTTAGGAGTTGAGTCTATTCTGGCTGGAAATTTGGGTAACAGGTGCTCCTACACGAGTGATTTGGAGCTagctgcttttttgttttttaaacatatagcttttttttttttttttTACAGGGTGCATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36263 lncRNA upstream 2640 48552849 ~ 48553157 (+) True G26994
TU36262 lncRNA upstream 3130 48552233 ~ 48552667 (+) True G26993
TU36251 lncRNA upstream 105341 48418832 ~ 48450456 (+) True G26982
TU36150 lncRNA upstream 239903 48278267 ~ 48315894 (+) False G26915
TU36145 lncRNA upstream 342815 48212137 ~ 48212982 (+) True G26910
TU36298 lncRNA downstream 22750 48664655 ~ 48668517 (+) True LOC111188407
XR_002648485.1 lncRNA downstream 22979 48664884 ~ 48668564 (+) False LOC111188407
TU36382 lncRNA downstream 81426 48723331 ~ 48735530 (+) True G27072
TU36411 lncRNA downstream 123584 48765489 ~ 48765945 (+) True G27099
TU36446 lncRNA downstream 212607 48854512 ~ 48874216 (+) False G27130
XM_007255378.3 mRNA upstream 244257 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA upstream 244257 48240716 ~ 48311540 (+) True cep85l
XM_022678324.1 mRNA upstream 336453 48200936 ~ 48219344 (+) True mcm9
XM_007255382.3 mRNA upstream 359258 47941106 ~ 48196539 (+) False fam184a
XM_007255380.3 mRNA upstream 359296 47940437 ~ 48196501 (+) True fam184a
XM_022662038.1 mRNA downstream 7783 48649688 ~ 48654677 (+) True LOC103035465
XM_022662030.1 mRNA downstream 7791 48649696 ~ 48654677 (+) False LOC103035465
XM_007254902.2 mRNA downstream 30182 48672087 ~ 48679878 (+) True LOC103035149
XM_007254901.3 mRNA downstream 48219 48690124 ~ 48694492 (+) True LOC103034613
XM_022662098.1 mRNA downstream 57708 48699613 ~ 48707949 (+) True LOC103042815
TU36151 other upstream 272923 48278267 ~ 48282874 (+) True G26915
TU36153 other upstream 272923 48280765 ~ 48282874 (+) False G26915
TU35893 other upstream 2025410 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 5061482 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 5130891 43424392 ~ 43424906 (+) True G25880
TU36385 other downstream 99309 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 679516 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 805940 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1697805 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 2103002 50744907 ~ 50749937 (+) False nup43

Expression Profile