RNA id: TU36266


Basic Information

Item Value
RNA id TU36266
length 417
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G26996
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48562604 ~ 48567294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gTGATGTTTAAGCACAGCTTCACTTTATATGAGAATCAGTGTAAAGTCTCTGGGTCACGTCAGTGTTAAGTCACCAACTCAAACTCAGCAATGTCTGCTGCGTTCTTTGTCCTTTGACTTCTTTGGGCTGCGACTGCGATCTCGTTTGTGACTCTTTTCCTTGTGCTTACCATGTTTGTGGTGACTGTCCCTgtccctttccctctctctgtctcgctctctgtccctgtctctatgcctctctttctctcgttctctttctctGGAGCGTGATCTTTGCCTGCTTTCTTTCCGGTCTCTTCGCCCTTCATCTTCATCCTTTGATTTCTTTCCTTTCCGGTAGTCATCATCATCTGACTGTTTCCTCTTCTCTCGCTGCTTTCTATCATCTCTCCTTTCCACTTGCTCCTCGTCTTC

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36263 lncRNA upstream 9447 48552849 ~ 48553157 (+) True G26994
TU36262 lncRNA upstream 9937 48552233 ~ 48552667 (+) True G26993
TU36251 lncRNA upstream 112148 48418832 ~ 48450456 (+) True G26982
TU36150 lncRNA upstream 246710 48278267 ~ 48315894 (+) False G26915
TU36145 lncRNA upstream 349622 48212137 ~ 48212982 (+) True G26910
TU36304 lncRNA downstream 67150 48634444 ~ 48634842 (+) True G27008
TU36298 lncRNA downstream 97361 48664655 ~ 48668517 (+) True LOC111188407
XR_002648485.1 lncRNA downstream 97590 48664884 ~ 48668564 (+) False LOC111188407
TU36382 lncRNA downstream 156037 48723331 ~ 48735530 (+) True G27072
TU36411 lncRNA downstream 198195 48765489 ~ 48765945 (+) True G27099
XM_007255378.3 mRNA upstream 251064 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA upstream 251064 48240716 ~ 48311540 (+) True cep85l
XM_022678324.1 mRNA upstream 343260 48200936 ~ 48219344 (+) True mcm9
XM_007255382.3 mRNA upstream 366065 47941106 ~ 48196539 (+) False fam184a
XM_007255380.3 mRNA upstream 366103 47940437 ~ 48196501 (+) True fam184a
XM_022678326.1 mRNA downstream 11509 48578803 ~ 48618075 (+) True LOC103035773
XM_022678336.1 mRNA downstream 53436 48620730 ~ 48621912 (+) True LOC111194359
XM_022662038.1 mRNA downstream 82394 48649688 ~ 48654677 (+) True LOC103035465
XM_022662030.1 mRNA downstream 82402 48649696 ~ 48654677 (+) False LOC103035465
XM_007254902.2 mRNA downstream 104793 48672087 ~ 48679878 (+) True LOC103035149
TU36264 other upstream 3864 48555797 ~ 48558740 (+) True G26995
TU36151 other upstream 279730 48278267 ~ 48282874 (+) True G26915
TU36153 other upstream 279730 48280765 ~ 48282874 (+) False G26915
TU35893 other upstream 2032217 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 5068289 43490786 ~ 43494315 (+) False LOC103033920
TU36292 other downstream 23655 48590949 ~ 48604905 (+) False LOC103035773
TU36385 other downstream 173920 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 754127 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 880551 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1772416 50339710 ~ 50340077 (+) False moxd1

Expression Profile