RNA id: TU36292


Basic Information

Item Value
RNA id TU36292
length 419
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC103035773
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48578803 ~ 48618075 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGAACCAAAACTGATCTCAGAGTgcagctctctttctctctctctctctctctctctctctctctctcaggaaaaTGGCAGAGCCCAGCCTTTCAGTAGATCAGGATCAGTTCAACTGTCCAGTCTGTTTGGAGGTGCTGAAGGATACAGTGGCCATTACCTGTGGACATAGTTTCCGTATGAATCAACTAAAGGAAAACCAGATGAATTCCCAGCAGAGAATccaggagaaagagAAAACTGTGCAGGAACTGAAACAGGCGGTAAAATCTCTTAAGCTCTCTGCACAGtcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACTGAGTGCAGCTGAAGAACTTct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36266 lncRNA upstream 23655 48562604 ~ 48567294 (+) True G26996
TU36263 lncRNA upstream 37792 48552849 ~ 48553157 (+) True G26994
TU36262 lncRNA upstream 38282 48552233 ~ 48552667 (+) True G26993
TU36251 lncRNA upstream 140493 48418832 ~ 48450456 (+) True G26982
TU36150 lncRNA upstream 275055 48278267 ~ 48315894 (+) False G26915
TU36304 lncRNA downstream 29539 48634444 ~ 48634842 (+) True G27008
TU36298 lncRNA downstream 59750 48664655 ~ 48668517 (+) True LOC111188407
XR_002648485.1 lncRNA downstream 59979 48664884 ~ 48668564 (+) False LOC111188407
TU36382 lncRNA downstream 118426 48723331 ~ 48735530 (+) True G27072
TU36411 lncRNA downstream 160584 48765489 ~ 48765945 (+) True G27099
XM_022662058.1 mRNA upstream 25348 48541535 ~ 48565601 (+) True amd1
XM_007255378.3 mRNA upstream 279409 48232270 ~ 48311540 (+) False cep85l
XM_007255377.3 mRNA upstream 279409 48240716 ~ 48311540 (+) True cep85l
XM_022678324.1 mRNA upstream 371605 48200936 ~ 48219344 (+) True mcm9
XM_007255382.3 mRNA upstream 394410 47941106 ~ 48196539 (+) False fam184a
XM_022678336.1 mRNA downstream 15825 48620730 ~ 48621912 (+) True LOC111194359
XM_022662038.1 mRNA downstream 44783 48649688 ~ 48654677 (+) True LOC103035465
XM_022662030.1 mRNA downstream 44791 48649696 ~ 48654677 (+) False LOC103035465
XM_007254902.2 mRNA downstream 67182 48672087 ~ 48679878 (+) True LOC103035149
XM_007254901.3 mRNA downstream 85219 48690124 ~ 48694492 (+) True LOC103034613
TU36264 other upstream 32209 48555797 ~ 48558740 (+) True G26995
TU36151 other upstream 308075 48278267 ~ 48282874 (+) True G26915
TU36153 other upstream 308075 48280765 ~ 48282874 (+) False G26915
TU35893 other upstream 2060562 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 5096634 43490786 ~ 43494315 (+) False LOC103033920
TU36385 other downstream 136309 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 716516 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 842940 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1734805 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 2140002 50744907 ~ 50749937 (+) False nup43

Expression Profile