RNA id: TU36454


Basic Information

Item Value
RNA id TU36454
length 548
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G27130
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48854512 ~ 48874216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcaaccacctagcaaccgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccaacttagcaaccacttagcaaccaccttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaaccactttagaaacgaaagcaactgcctagcaaccacttagcaacaccttaacaaccattgggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36411 lncRNA upstream 88567 48765489 ~ 48765945 (+) True G27099
TU36382 lncRNA upstream 118982 48723331 ~ 48735530 (+) True G27072
XR_002648485.1 lncRNA upstream 185948 48664884 ~ 48668564 (+) False LOC111188407
TU36298 lncRNA upstream 185995 48664655 ~ 48668517 (+) True LOC111188407
TU36304 lncRNA upstream 219670 48634444 ~ 48634842 (+) True G27008
TU36485 lncRNA downstream 30440 48904656 ~ 48906548 (+) True G27150
TU36500 lncRNA downstream 244412 49118628 ~ 49121736 (+) False G27164
TU36501 lncRNA downstream 244412 49118628 ~ 49121736 (+) True G27164
TU36591 lncRNA downstream 394153 49268369 ~ 49268626 (+) True G27224
TU36593 lncRNA downstream 443246 49317462 ~ 49321378 (+) True G27225
XM_007254899.2 mRNA upstream 131602 48711573 ~ 48722910 (+) True ginm1
XM_022662098.1 mRNA upstream 146563 48699613 ~ 48707949 (+) True LOC103042815
XM_007254901.3 mRNA upstream 160020 48690124 ~ 48694492 (+) True LOC103034613
XM_007254902.2 mRNA upstream 174634 48672087 ~ 48679878 (+) True LOC103035149
XM_022662030.1 mRNA upstream 199835 48649696 ~ 48654677 (+) False LOC103035465
XM_007254912.2 mRNA downstream 9786 48884002 ~ 48895979 (+) True casp8ap2
XM_007254914.3 mRNA downstream 23000 48897216 ~ 48900234 (+) True gja10
XM_007233468.3 mRNA downstream 1465348 50339564 ~ 50408570 (+) True moxd1
XM_007233467.3 mRNA downstream 1638737 50512953 ~ 50515944 (+) True ctgf
XM_007233462.3 mRNA downstream 1832033 50706249 ~ 50723932 (+) True lrp11
TU36385 other upstream 112073 48741214 ~ 48742439 (+) True G27075
TU36265 other upstream 212607 48555797 ~ 48641905 (+) False G26995
TU36292 other upstream 249607 48590949 ~ 48604905 (+) False LOC103035773
TU36264 other upstream 295772 48555797 ~ 48558740 (+) True G26995
TU36153 other upstream 571638 48280765 ~ 48282874 (+) False G26915
XR_002649725.1 other downstream 447205 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 573629 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1465494 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 1870691 50744907 ~ 50749937 (+) False nup43
TU36770 other downstream 1895669 50769885 ~ 50772161 (+) False lyrm2

Expression Profile