RNA id: TU36501


Basic Information

Item Value
RNA id TU36501
length 2617
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G27164
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49118628 ~ 49121736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGCACAACGTCCACCTCCATTTTATTTCAAGATGCGATCTTCTTCTGTGTATTCCCACTCCCAATAGCTTAAGAAATCAGACATCTTATTTACAGCACATAGTACTCATAGAAACTCATCATACAAATGGAACTCCAGGGAGAAACTCAACAAAACAGCTGCTTCACAATCATACCATTATATTGCTCGatgacaaataataataatatataatataataatgaaataaacaaaacagggagAAGAAAACTCAGAATTGTGAAGCATTCAAAATCGATCCAGTCCTGTTCAAGATCCTCTTAAAGGGTGAAACCAAGTTGTAACTGGGGCAAAATgtgaatgtgcaaaaaaaaataaaaataaaaaaagaagggaaaggggcttaaaaaaaaaaaaaaaaaaaaaaaaaaggagaggagCAACTTAACTGACAAGTGGAGGGAACTGGCAAACCTATAATGTAACACAGATGGCATCACAGGCGGGACCTAATTGAGAACTTGACTAAACTAAATGAAATGGTTTAGTCAAACATACAGACATAACTGTGTCTCAGTGATTTCGGCAGCATACAAACATCTTTCAAATTGGCCGGAAAAGTGTCTGGACACTTCTCAGGCATTGGTTCAGTGTCCTGATTCAGTTCATTTGCATATGCAAGCCTTGCCAAAAATAATgaggaaagaaataaacaaaaacaaaaagaaagaaaaacagccaCTCGTGCACACCAGTTAAGTTATACTGTTAATTACACTGAACAAGCCCGTCCTATTAGAACACCTCGCCTTCCGATAATGCAACTTAAAcgggccacataaaaatgcAAGCAATTAAAATTCTAAGGCAACATGTGAACTAAGAATACcccaagaaataaacaaacaaaaaaaaaaaaattcaaacaaaaaaacgaaACCAGAGCAGGCAGGAGGGAACACTCCGACCCGTTTGATACTACAGCTTCCTACCCATCGAGACCTGTGTGGGAGTCACCGTACGACATCACCGAacgataaataaacagaaacacccgAAGAATACTGAATCCATGATCAGCCTGGTGGGCTTTAAAATCGCATAACCTATACTGCAAGTCTGTCCTTGTTTCACTGGCTGGCTCAGCCTGCTCTAAACTGGCTGGGCTGACTGGGgggctaaaaaataataataatagaaaagaaaaaaagaaaagataacgCATTAAAAGCCATgtgacatacatatatataatttatatattgcaTCTTTCTGTGAGGCTGATTTATCTCGTACATGTAAATAAACACGTCTTCCCTTACTTCATCATAGACGCCGGAGGGTCGACGCGCAAAAGGCATACGCAAAAAATACAtccctcattttttttctaatgacaGACATTAAAACGCCTTCTGTGTCAGCAAGAACGAAGGTGATATCTTTGAAAGAtatgttctttttctcttttttttgttttgcataagGTTTAAAATGAAAAGACACGCAAAAGTAAGCTTTCAAATATGGAGCTAATACGaagatttaaaaacaataaaattaaatgtttagaaTCTATGTAACTTAAAACCACGTTCACATTCTCGAGGAACGGCAGCCATTGAAAGGGCCTGAGGGTCCGATCCTTCAGGGGAATTCAGGAGAACGTCAGAGGAGGGTTGAATAGGAGCGACATCCTGCGGTAGGGTGGGGGGCGACCGCAGAGATGGAGACAGACATGCGTCAATTTGTTCCTTCCTGGCCTCTGATTGGACACTTTTACTTGGTGCCAAAAGAAAAGGGACCCACACTCACACCTCGGCGTCAGCCTTTAAAACGGAGTGCCCCCCGCTGACTTGCGAGAGAGAAAACTGAACTTTGGCTCTTTAGGACCAAGGGGCACTACATGGCATACAGACGGACTGCCCTCTTATCCCCAAAATGGGCTCAACGTTGTTCACAGCAGCAGCCACTGGGAGAATGAAGGAGTTTTTGCAGACATGAGGGCTGATTTGTTGACCCAGTGCTGGACTCAAAGACGCAGGAGGCAGCATGCTCGTGCATGAGGGCGGTGAGGGCTGGGTGGTGGAGAGGGGTAAACTCTGTGTGTCGCCGCGTGAAGGCTCCTGGGTAAGCCTTCGCTTATAGATACAGGGAAGATGGCCGTAACTGGGGAGGACAGACGTTTAGGAGGTGTAAAAGAGAAGCAGTCTGTCTGtggtgaagtttttttttggggtggCTTTGTTTGAGGGGGCAGGGTGAAAGGTGGGAGTGAGGGCGGAGTGTTTAAACTGCATCATGATGTGCCCTGTCTCTTCTGCTGCTGAGCACGGATCAGCTCCAGCTGCTTCTTGCACTGCTGGTAGTAGGTGGACAGGCTTTTGTTCTCTTCTAGAAGTTTCTTGTGCTCCTGGACCAGACGGGATGTGTTCTGCTGGTCCTTCTCGTCCTGGTCGAGCTCTGCAATCAGCTCATTCCTGTATCAGAGCACACAGACATAAGAGTCTTAAGatattgaaaaaacaaacacacaaaaagtttatttacagtatgaatGTTCCGTTTCGACAAACTAGCTCTAACCCCAGCatttaactataactaattatttcatatttcaatttcCCTTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36485 lncRNA upstream 212080 48904656 ~ 48906548 (+) True G27150
TU36446 lncRNA upstream 244412 48854512 ~ 48874216 (+) False G27130
TU36454 lncRNA upstream 244412 48854512 ~ 48874216 (+) True G27130
TU36411 lncRNA upstream 352683 48765489 ~ 48765945 (+) True G27099
TU36382 lncRNA upstream 383098 48723331 ~ 48735530 (+) True G27072
TU36591 lncRNA downstream 146633 49268369 ~ 49268626 (+) True G27224
TU36593 lncRNA downstream 195726 49317462 ~ 49321378 (+) True G27225
TU36619 lncRNA downstream 506798 49628534 ~ 49628797 (+) True G27248
TU36622 lncRNA downstream 513120 49634856 ~ 49635084 (+) True G27251
TU36635 lncRNA downstream 641247 49762983 ~ 49763258 (+) True G27263
XM_007254914.3 mRNA upstream 218394 48897216 ~ 48900234 (+) True gja10
XM_007254912.2 mRNA upstream 222649 48884002 ~ 48895979 (+) True casp8ap2
XM_007254899.2 mRNA upstream 395718 48711573 ~ 48722910 (+) True ginm1
XM_022662098.1 mRNA upstream 410679 48699613 ~ 48707949 (+) True LOC103042815
XM_007254901.3 mRNA upstream 424136 48690124 ~ 48694492 (+) True LOC103034613
XM_007233468.3 mRNA downstream 1217828 50339564 ~ 50408570 (+) True moxd1
XM_007233467.3 mRNA downstream 1391217 50512953 ~ 50515944 (+) True ctgf
XM_007233462.3 mRNA downstream 1584513 50706249 ~ 50723932 (+) True lrp11
XM_007255205.3 mRNA downstream 1623147 50744883 ~ 50753961 (+) True nup43
XM_007255206.3 mRNA downstream 1636289 50758025 ~ 50768239 (+) True lats1
TU36385 other upstream 376189 48741214 ~ 48742439 (+) True G27075
TU36265 other upstream 476723 48555797 ~ 48641905 (+) False G26995
TU36292 other upstream 513723 48590949 ~ 48604905 (+) False LOC103035773
TU36264 other upstream 559888 48555797 ~ 48558740 (+) True G26995
TU36153 other upstream 835754 48280765 ~ 48282874 (+) False G26915
XR_002649725.1 other downstream 199685 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 326109 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1217974 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 1623171 50744907 ~ 50749937 (+) False nup43
TU36770 other downstream 1648149 50769885 ~ 50772161 (+) False lyrm2

Expression Profile