RNA id: TU36635


Basic Information

Item Value
RNA id TU36635
length 276
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G27263
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49762983 ~ 49763258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATATAAGTACCTAGGTATCTGGTTGGATAACACCTTGTCTTTCTCAACACACATTAACAAGCTGCAGTCCAATGTTAAGTCTAAAATCGGCTATTTGTATAGAACCCGCTCCTCTCTAAGTCGCAATACGAAACTGACCCTAGTTCAAATGACTATTCTGCCTATGTTTGATTACGGCGATGTCGTATACAGATCTGCTTGCAAAAGCCTTCTCCACAAACTTGATGTGCTTTATCATTCAGCCATCCGGTTTGCCATAAATGCTCCTTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36622 lncRNA upstream 127899 49634856 ~ 49635084 (+) True G27251
TU36619 lncRNA upstream 134186 49628534 ~ 49628797 (+) True G27248
TU36593 lncRNA upstream 441605 49317462 ~ 49321378 (+) True G27225
TU36591 lncRNA upstream 494357 49268369 ~ 49268626 (+) True G27224
TU36500 lncRNA upstream 641247 49118628 ~ 49121736 (+) False G27164
TU36636 lncRNA downstream 60 49763318 ~ 49763743 (+) True G27264
TU36640 lncRNA downstream 40170 49803428 ~ 49804506 (+) True G27268
TU36687 lncRNA downstream 513041 50276299 ~ 50276507 (+) True G27309
TU36690 lncRNA downstream 524512 50287770 ~ 50287973 (+) True G27312
TU36691 lncRNA downstream 548275 50311533 ~ 50311766 (+) True G27313
XM_007254914.3 mRNA upstream 862749 48897216 ~ 48900234 (+) True gja10
XM_007254912.2 mRNA upstream 867004 48884002 ~ 48895979 (+) True casp8ap2
XM_007254899.2 mRNA upstream 1040073 48711573 ~ 48722910 (+) True ginm1
XM_022662098.1 mRNA upstream 1055034 48699613 ~ 48707949 (+) True LOC103042815
XM_007254901.3 mRNA upstream 1068491 48690124 ~ 48694492 (+) True LOC103034613
XM_007233468.3 mRNA downstream 576306 50339564 ~ 50408570 (+) True moxd1
XM_007233467.3 mRNA downstream 749695 50512953 ~ 50515944 (+) True ctgf
XM_007233462.3 mRNA downstream 942991 50706249 ~ 50723932 (+) True lrp11
XM_007255205.3 mRNA downstream 981625 50744883 ~ 50753961 (+) True nup43
XM_007255206.3 mRNA downstream 994767 50758025 ~ 50768239 (+) True lats1
TU36609 other upstream 314762 49447845 ~ 49448221 (+) True G27238
XR_002649725.1 other upstream 429061 49321421 ~ 49333922 (+) True LOC111191919
TU36385 other upstream 1020544 48741214 ~ 48742439 (+) True G27075
TU36265 other upstream 1121078 48555797 ~ 48641905 (+) False G26995
TU36697 other downstream 576452 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 981649 50744907 ~ 50749937 (+) False nup43
TU36770 other downstream 1006627 50769885 ~ 50772161 (+) False lyrm2
TU36920 other downstream 1411230 51174488 ~ 51178374 (+) True G27489
TU37134 other downstream 2550767 52314025 ~ 52314266 (+) True G27683

Expression Profile