RNA id: TU36770


Basic Information

Item Value
RNA id TU36770
length 577
RNA type TUCP
GC content 0.43
exon number 3
gene id lyrm2
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50769863 ~ 50772162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtggttttgcgacatgtCAGGGTCATGTtagtattaaaatgctgttaaaATGTCTAAACTGCCGCGCACTGCACTGACCCTCAAACAGTTTCTACAGAGACAGAAGGTTCTAGGTCTGTACCGCAGTATGCTGAGGACCATTCGAGAGGTTCCAGAGGAGGCAGATCGCAAGTACTTGAGGGACTGGGCGAGAGAGGAGTTCAAAAGGAACAAGGAGGCGACTAACCAGGATGCGATTCGTATGATGATCACACAAGCCAACAATCATCTCCAAGAGCTGAAGACATCACTTGCCCTGGCCAAGAGTTGACGGATCACCATCAATAAATATACTCTGTAAAACCTGCACTagttttcctcctcctctttgtGGCCTGTTTGATTATTAGTATTACACTCTCACTGGGGTGAGCCTGACAAGTTCATCACATCTGCTGTGTACAGGAGGTTCATCAGCTTCTACAGACTGATGTATGATTTTTCTCAATCATTCGCATTGTATTTAATTTGTACAGTCCAAGCTTTGTGAATGCATTTTGATTAAATTAGTGTTGaaagaataaaatgaaaacGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36757 lncRNA upstream 66764 50702371 ~ 50703121 (+) True G27370
TU36753 lncRNA upstream 66816 50702371 ~ 50703069 (+) False G27370
TU36751 lncRNA upstream 94389 50674557 ~ 50675496 (+) True G27369
TU36711 lncRNA upstream 219903 50546608 ~ 50549982 (+) True G27333
TU36696 lncRNA upstream 359601 50409036 ~ 50410284 (+) True G27318
TU36889 lncRNA downstream 200776 50972937 ~ 50973244 (+) True G27463
TU36911 lncRNA downstream 390464 51162625 ~ 51167564 (+) True G27481
TU36922 lncRNA downstream 415702 51187863 ~ 51188330 (+) True G27491
TU36926 lncRNA downstream 454931 51227092 ~ 51227330 (+) True G27494
TU36927 lncRNA downstream 455261 51227422 ~ 51227631 (+) True G27495
XM_007255206.3 mRNA upstream 1646 50758025 ~ 50768239 (+) True lats1
XM_022662332.1 mRNA upstream 5797 50758025 ~ 50764088 (+) False lats1
XM_007255205.3 mRNA upstream 15924 50744883 ~ 50753961 (+) True nup43
XM_007233462.3 mRNA upstream 45953 50706249 ~ 50723932 (+) True lrp11
XM_007233467.3 mRNA upstream 253941 50512953 ~ 50515944 (+) True ctgf
XM_022662442.1 mRNA downstream 124200 50896361 ~ 50972664 (+) True ube2j1
XM_022662373.1 mRNA downstream 208354 50980515 ~ 51030792 (+) True LOC103030377
XM_007255209.3 mRNA downstream 311907 51084068 ~ 51145395 (+) True gabrr1
XM_022662454.1 mRNA downstream 420662 51192823 ~ 51222073 (+) True rngtt
XM_022662257.1 mRNA downstream 731059 51503220 ~ 51582902 (+) False dnajc13
TU36768 other upstream 19948 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 429808 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 1321664 49447845 ~ 49448221 (+) True G27238
XR_002649725.1 other upstream 1435963 49321421 ~ 49333922 (+) True LOC111191919
TU36385 other upstream 2027446 48741214 ~ 48742439 (+) True G27075
TU36920 other downstream 402327 51174488 ~ 51178374 (+) True G27489
TU37134 other downstream 1541864 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 1682270 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 1696611 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 1987952 52760113 ~ 52765175 (+) False LOC111188765

Expression Profile