RNA id: TU36922


Basic Information

Item Value
RNA id TU36922
length 468
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G27491
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51187863 ~ 51188330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACGTATGTCTGGAGACTATCCACAGACCATTTAattgtaatctgacaaagactctaggaggagttcgaatgagttcgtgaaaaatgtgtaaaaattgtacatttttcaaaatggccgacttcctgttgggcggagccaATACATGCCAATGTGTATTATGTGTGGCATTGTAATATCTATGCTTCTACCAAAAATCTTGAACATTGGAGAAATTTTGAGACAGCTACCGCTAATTTATTAGCCTAAACCAAAtggggggcgctgtagagtcatttAGCTCCACATTAGAAAAACGATTACATTTCTCGAAATCATTTAAAGGCATTATTGGGTCTGCTAATTTAGAAGAGGCTACGagctttctataaatgtcatataaaataggtggcgctagagagctgataaattatgaatatgaaaaattCCAATTTTACATCAAAGTACAAACTATGCCCAATAGGCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36911 lncRNA upstream 20299 51162625 ~ 51167564 (+) True G27481
TU36889 lncRNA upstream 214619 50972937 ~ 50973244 (+) True G27463
TU36757 lncRNA upstream 484742 50702371 ~ 50703121 (+) True G27370
TU36753 lncRNA upstream 484794 50702371 ~ 50703069 (+) False G27370
TU36751 lncRNA upstream 512367 50674557 ~ 50675496 (+) True G27369
TU36926 lncRNA downstream 38762 51227092 ~ 51227330 (+) True G27494
TU36927 lncRNA downstream 39092 51227422 ~ 51227631 (+) True G27495
TU36999 lncRNA downstream 290996 51479326 ~ 51535896 (+) True G27563
TU37080 lncRNA downstream 819584 52007914 ~ 52008225 (+) True G27633
TU37090 lncRNA downstream 900001 52088331 ~ 52090633 (+) False dsel
XM_007255209.3 mRNA upstream 42468 51084068 ~ 51145395 (+) True gabrr1
XM_022662373.1 mRNA upstream 157071 50980515 ~ 51030792 (+) True LOC103030377
XM_022662442.1 mRNA upstream 215199 50896361 ~ 50972664 (+) True ube2j1
XM_007255207.3 mRNA upstream 415701 50769863 ~ 50772162 (+) True lyrm2
XM_022662332.1 mRNA upstream 423775 50758025 ~ 50764088 (+) False lats1
XM_022662454.1 mRNA downstream 4493 51192823 ~ 51222073 (+) True rngtt
XM_022662257.1 mRNA downstream 314890 51503220 ~ 51582902 (+) False dnajc13
XM_022662237.1 mRNA downstream 314891 51503221 ~ 51584097 (+) True dnajc13
XM_022662242.1 mRNA downstream 314891 51503221 ~ 51584097 (+) False dnajc13
XM_022662245.1 mRNA downstream 314891 51503221 ~ 51584097 (+) False dnajc13
TU36920 other upstream 9489 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 415702 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 437926 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 847786 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 1739642 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 1125695 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 1266101 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 1280442 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 1571783 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 2434493 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile