RNA id: TU37091


Basic Information

Item Value
RNA id TU37091
length 1574
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G27643
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52090853 ~ 52092447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAGCAGATatgcagttctggaaaaaattaagagcccacttcagtttctgaatcagtttctctgatttgactatttataggtatatgtttaaagaaaatgaacattgttgtttttattctataaactacagacaacatttctcccaaatttcaagtaaaatattgtcatttagagcatttattttcagaataaCCCTTTTtgtaaatcacagttttcatgcatcctccaccagtcttacacactgcttttggataactttatgccgcccctggtgcaaaaattcaagcagttcagcttggtctgacggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaataaaagaaactcatcatttttaagtggtctcttattttttccagagctgtgtataaaaGTTAAGACTTAAAAAATCCACCACCAGTTTTGTgttctattttgttttgtttttcctccCAAAGTCTGCAGTGGTTTAGATGTAATCAGAGTGGTTTAATGGGAGATGGTTCCGTGAAGAGAAGCTTAAGTCAGATTTTGCTACAGTGGTGATAGATAATAGACAACGGGGACCTGCATGGCTTCATTGCAAAATTACTGATATGCCCaaaatcatgggacaggaactagtatcttGTACTATTACTTTTGCCGTAGCCGATGGAATgtaaatgatgatgattatgatgatgcaTTGACCTGCAGAATATGAGTCTCTTTTCTGTGTGCATGGgaaattctagccagacacgaCAGGTTATGATCATTACACCCACTgagctgtctactgtgggtggtaatgacttCTATAATGTATTCTTGGTACACATTTGAGACTGTAGGTTGAGAAATGGTACAGTAAATGCCTCCTGAAGTCCCACTTTACAATCAATTTACAGTGTATTGCTAtcacatgacttttggcatttcagTGCATGTCTTAGGCCAAAGTTTACTCTGATATACTGTTGTGATTAAGCATTAATAAGGCATTAAACCCTTTTGTTGTCTATTTCCTACCATCTCCACCATAAGAATAATTCTGACTTAAGCTTCTCTAGACTGGTGCGTTTCAGATCAAACACTTGGACGAGGGTTCAAGGGCTAGATTGAAAatctgtgatttaaagcagcatcTGTACTTGAGTTGTTGTCTCTTGTCTCCTCTTTAAGGCTGTGCACGTATGAACAGCCCTGCTTGTCTCCTCGGTTGTTTTAAAGTCGTGGTCTTTGAATGTGTGTACACTTGCCGAgccaggctctctctctctctctctctctcatgtaaaCTGCTTCCTTCTCTCTGTTTGTGGGTAAATGTCTCCAAGCTTCTGTGGCCTTGAAtctgatgagaaaaaaaaagaacttatttaaacatgtttttcatgttgtttattttgcttCCCGAGCAGATGGCTGACGTCTCGACGGCAAATAAAGATGATTTATGACCAAAAGATTATTTAGCTGTGacgccctgtttttttttttttttaaccagcatGCACTTTGCCTCTCATTTCATGTTCTTCTCGTCTCGCCGTCCAGAG

Function

GO: NA

KEGG:

id description
ko04970 Salivary secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37090 lncRNA upstream 220 52088331 ~ 52090633 (+) False dsel
TU37080 lncRNA upstream 82628 52007914 ~ 52008225 (+) True G27633
TU36999 lncRNA upstream 554957 51479326 ~ 51535896 (+) True G27563
TU36927 lncRNA upstream 863222 51227422 ~ 51227631 (+) True G27495
TU36926 lncRNA upstream 863523 51227092 ~ 51227330 (+) True G27494
TU37112 lncRNA downstream 90932 52183379 ~ 52183744 (+) True G27662
TU37115 lncRNA downstream 111438 52203885 ~ 52204371 (+) True G27664
TU37116 lncRNA downstream 115579 52208026 ~ 52208541 (+) True G27665
TU37125 lncRNA downstream 204595 52297042 ~ 52297262 (+) True G27674
TU37126 lncRNA downstream 206332 52298779 ~ 52298997 (+) True G27675
XM_007258974.3 mRNA upstream 2188 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 395836 51586207 ~ 51695017 (+) True tmx3
XM_022662245.1 mRNA upstream 506756 51503221 ~ 51584097 (+) False dnajc13
XM_007252930.2 mRNA downstream 229545 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 275436 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 290498 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 311435 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 311435 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 912479 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1318692 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1340916 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1750776 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2642632 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 221578 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 361984 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 376325 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 667666 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1530376 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile