RNA id: TU37109


Basic Information

Item Value
RNA id TU37109
length 548
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G27660
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52181616 ~ 52183216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctgtctgtccTGCTATCTCAGCAACCTCAGCCTCTGCCCCACTGGACACCTCTCTACCTCTTCTGAGTGCTACACCGGTCTCCCTCCCACAGACTGTCAGCACATCCAGTCTGCCACCCCCCACCTCCACCCTCCACCTCTCTGCAGACCAGGTCACAGGGGCGCTGAGGAGACTCCGCTCAAGGAAAGCAGCTGGACCTGACGAGGTGAGCCCAAGACTTCTCAAGGCTTGCGCCTTTTGAACTTGGATTACCCTGTCGAAcatcttcaacatgagcctgcaGTTGGGAGGGTTCCAACGCTGTGGAAAACCTCATGCCTGGTCCCTGTTCCCAAGAAACCTCGCCCCAGTGAGCTCAATGACTTCAGGCCAGTAGCTTTGACCTCCCACATTATGAAGACCtgcacaacagacagactcagaaaatccttcattccgagagccatcagactctttaactcctcccatcggggacgggatgctgctactgactgagtttaactcagtcacaccacatggactttattactccaccacttaattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37093 lncRNA downstream 88888 52090754 ~ 52092728 (-) True G27645
TU37079 lncRNA downstream 176872 52004247 ~ 52004744 (-) True G27632
TU37077 lncRNA downstream 243261 51938101 ~ 51938355 (-) True G27630
TU37075 lncRNA downstream 275149 51906087 ~ 51906467 (-) True G27628
TU37073 lncRNA downstream 281493 51899547 ~ 51900123 (-) True G27626
TU37138 lncRNA upstream 110702 52293918 ~ 52295950 (-) False LOC103040973
TU37139 lncRNA upstream 110702 52293918 ~ 52295950 (-) False LOC103040973
TU37141 lncRNA upstream 120385 52303601 ~ 52303977 (-) True G27689
TU37142 lncRNA upstream 125132 52308348 ~ 52308767 (-) True G27690
TU37214 lncRNA upstream 182625 52365841 ~ 52401196 (-) True G27738
XM_007258977.3 mRNA downstream 686344 51484768 ~ 51495272 (-) False lztfl1
XM_007258976.3 mRNA downstream 686344 51484768 ~ 51495272 (-) True lztfl1
XM_022662381.1 mRNA downstream 699740 51465284 ~ 51481876 (-) True LOC103045300
XM_022662384.1 mRNA downstream 699740 51465316 ~ 51481876 (-) False LOC103045300
XM_007258975.3 mRNA downstream 721533 51455657 ~ 51460083 (-) True LOC103038926
XM_022662440.1 mRNA upstream 81832 52265048 ~ 52272380 (-) True LOC103029105
XM_022662320.1 mRNA upstream 110664 52293880 ~ 52321920 (-) False LOC103040973
XM_022662323.1 mRNA upstream 110664 52293880 ~ 52321920 (-) True LOC103040973
XM_022662441.1 mRNA upstream 191300 52374516 ~ 52382949 (-) True cgrrf1
XM_007252933.3 mRNA upstream 191300 52374516 ~ 52382530 (-) False cgrrf1
XR_001518286.2 other downstream 1441182 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1641944 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1641944 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1641944 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1649977 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 603256 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 603256 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1439060 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1867545 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2373730 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile