RNA id: TU37115


Basic Information

Item Value
RNA id TU37115
length 487
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G27664
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52203885 ~ 52204371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTAACGCGggaccagacgggaggcggacgtaaaagcgggtaagacagactttaatgaataataaataaacaaataaacaaacaggggaataacgaatataaatatgtacataaacaaacagggaaaacaaacaaagagctaaactaaacagataagtagctaaactaaacagataataactaaacagggctagggatatatatacaaaggataaatacataaatatatacaaaacaaggGATATAAACAAACACGAGATATaagcaaataatacaaactaacAAAAGAACTAGAAACTTGGCAAAACTATAACTAGGACGTGACGTGACAGACAAcgtaggaaggtgcaaagaccgaccgcaaACGTAGATTAACAGGTACTATATATACTAAacaagaaacaatgaacacctggggagacaggtaacgaggggcggagctacaaattagacacacgtgacgaaaaattacaggagaaacacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 20141 52183379 ~ 52183744 (+) True G27662
TU37091 lncRNA upstream 111438 52090853 ~ 52092447 (+) True G27643
TU37090 lncRNA upstream 113252 52088331 ~ 52090633 (+) False dsel
TU37080 lncRNA upstream 195660 52007914 ~ 52008225 (+) True G27633
TU36999 lncRNA upstream 667989 51479326 ~ 51535896 (+) True G27563
TU37116 lncRNA downstream 3655 52208026 ~ 52208541 (+) True G27665
TU37125 lncRNA downstream 92671 52297042 ~ 52297262 (+) True G27674
TU37126 lncRNA downstream 94408 52298779 ~ 52298997 (+) True G27675
TU37127 lncRNA downstream 97798 52302169 ~ 52302711 (+) True G27676
TU37129 lncRNA downstream 99192 52303563 ~ 52304228 (+) True G27678
XM_007258974.3 mRNA upstream 115220 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 508868 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 620972 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 117621 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 163512 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 178574 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 199511 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 199511 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1025511 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1431724 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1453948 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1863808 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2755664 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 109654 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 250060 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 264401 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 555742 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1418452 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile