RNA id: TU37126


Basic Information

Item Value
RNA id TU37126
length 219
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G27675
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52298779 ~ 52298997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTACTGCATCATGCGATCGTGTTCCCATCACCTCCCGGCCCTGGGAATCCACACACCAGCAGTAGCTGCTGTTGCCGTAGCACTGCACAGATAGGAAGTGTCCACGTGCGTCACACTGGGGCATGTAGTCCTGAGGGTCAGGCTGGCCACCATAGTGACTCAGTAGAGTGGTCCTCCAGCGCTCGCACAACGTCTCCGCCCTCGGGACCAGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37125 lncRNA upstream 1517 52297042 ~ 52297262 (+) True G27674
TU37116 lncRNA upstream 90238 52208026 ~ 52208541 (+) True G27665
TU37115 lncRNA upstream 94408 52203885 ~ 52204371 (+) True G27664
TU37112 lncRNA upstream 115035 52183379 ~ 52183744 (+) True G27662
TU37091 lncRNA upstream 206332 52090853 ~ 52092447 (+) True G27643
TU37127 lncRNA downstream 3172 52302169 ~ 52302711 (+) True G27676
TU37129 lncRNA downstream 4566 52303563 ~ 52304228 (+) True G27678
TU37131 lncRNA downstream 10730 52309727 ~ 52309938 (+) True G27680
TU37132 lncRNA downstream 11838 52310835 ~ 52311048 (+) True G27681
TU37133 lncRNA downstream 14038 52313035 ~ 52313234 (+) True G27682
XM_007258974.3 mRNA upstream 210114 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 603762 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 715866 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 22995 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 68886 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 83948 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 104885 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 104885 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1120405 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1526618 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1548842 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1958702 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2850558 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 15028 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 155434 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 169775 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 461116 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1323826 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile