RNA id: TU37127


Basic Information

Item Value
RNA id TU37127
length 543
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G27676
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52302169 ~ 52302711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTTGGTCGCAGTTAGCATGTGCTGTCCCCGGCAGCGTCCGTGTTCCTACTCTCTCCTGCCCCCTGCTGTCCACGCACCAGCAGTGTCCAGTTGATCCCAGACATTGCAGTGGTTTGTACTGGCCCTTCTCATCACACTGAGGGATGTAATCCTGCAGCATGGCGTCACCCCCCCAACTCTGCAGACCCTTCAACAGACTGTCTCTGTGGCGCTCACACACTGACATGACCAGCTCCACCTGCTCTGGGGAATAAACAGAGTAACCACTGCTCAAATTCACTGACTATCAGTCACAACTGTTATGCTAAGTAATGATGGATCAGACAGAAATATGCTGCGGTCTGATGAATTAAtcattaggattttttttggataattGTGGTCTGAAGTTTGGCTTTTTTGCCAGAGCCACTTTTAAGCGTTAGTTTTTTCCATCTAGGGAAGAATATGTGGcaaatgtatattaaatgattaatgatcatattttaaaattgtattattgtatgaAGCATGAAGTAGCTACAGCTGTGAACACTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37126 lncRNA upstream 3172 52298779 ~ 52298997 (+) True G27675
TU37125 lncRNA upstream 4907 52297042 ~ 52297262 (+) True G27674
TU37116 lncRNA upstream 93628 52208026 ~ 52208541 (+) True G27665
TU37115 lncRNA upstream 97798 52203885 ~ 52204371 (+) True G27664
TU37112 lncRNA upstream 118425 52183379 ~ 52183744 (+) True G27662
TU37129 lncRNA downstream 852 52303563 ~ 52304228 (+) True G27678
TU37131 lncRNA downstream 7016 52309727 ~ 52309938 (+) True G27680
TU37132 lncRNA downstream 8124 52310835 ~ 52311048 (+) True G27681
TU37133 lncRNA downstream 10324 52313035 ~ 52313234 (+) True G27682
TU37135 lncRNA downstream 12401 52315112 ~ 52315495 (+) True G27684
XM_007258974.3 mRNA upstream 213504 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 607152 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 719256 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 19281 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 65172 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 80234 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 101171 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 101171 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1123795 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1530008 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1552232 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1962092 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2853948 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 11314 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 151720 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 166061 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 457402 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1320112 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile