RNA id: TU37129



Basic Information


Item Value
RNA id TU37129
length 666
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G27678
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52303563 ~ 52304228 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gtgttgggaagtaacggattacatgtaacggcgttacgtaatcagattacaaattataagtaactgtaatccgttacagttactgcttcagtaagtggtaatcagattacagttactctgctaaaataaaagggttacattgcggtactttcctatttttgctcttccaatccaacactgacaaaacgcaaataacattttgcggtgaatacgctctgatatgacagggaaggAGGGGCAGCGGCTCACAGCGGCTCCACgctcacacaacgagacgaaattaactgacattttggtcaacgaataaaaacgagacgaaaatgtttggcagggacgaaatccaatcagaactgatttaggtctgtgaaaggtagggaccagttaggaagagatccaatcactgctactttagcgaaggtggagtacccgcctctcctgcagcagcgccgcgcggaattaacctgtcgttacggagctcgactggaagttaactccacagtgttcagcagggagagagagagagagggccgatatatttctcttttgacgtcgcgaaaaacaagataacgtgtaaaccgcgtggagcgactccattaccggtaaaaacaccactaatctttcagcttctgcagaccagagtcacacagatctccatgcagagatccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37127 lncRNA upstream 852 52302169 ~ 52302711 (+) True G27676
TU37126 lncRNA upstream 4566 52298779 ~ 52298997 (+) True G27675
TU37125 lncRNA upstream 6301 52297042 ~ 52297262 (+) True G27674
TU37116 lncRNA upstream 95022 52208026 ~ 52208541 (+) True G27665
TU37115 lncRNA upstream 99192 52203885 ~ 52204371 (+) True G27664
TU37131 lncRNA downstream 5499 52309727 ~ 52309938 (+) True G27680
TU37132 lncRNA downstream 6607 52310835 ~ 52311048 (+) True G27681
TU37133 lncRNA downstream 8807 52313035 ~ 52313234 (+) True G27682
TU37135 lncRNA downstream 10884 52315112 ~ 52315495 (+) True G27684
TU37165 lncRNA downstream 38720 52342948 ~ 52348256 (+) True G27701
XM_007258974.3 mRNA upstream 214898 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 608546 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 720650 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 17764 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 63655 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 78717 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 99654 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 99654 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1125189 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1531402 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1553626 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1963486 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2855342 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 9797 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 150203 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 164544 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 455885 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1318595 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile