RNA id: TU37131


Basic Information

Item Value
RNA id TU37131
length 212
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G27680
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52309727 ~ 52309938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTTCCTTCCATCGCCTCTGAAGCCCATGGCACACTGGCAGTGGTACTGCAGCCCCTCTCCCGGCAGACACAGGGCCATGGGGTCACAGTAATGTTTCCCTGACTGACACGGATTCAGCTCCACCAGATCTGGCAGCTCACCTGATCACACACCCAGTATCAGTTAGTCACAGTATCAGGTAAACACAACATTTGagttacattataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37129 lncRNA upstream 5499 52303563 ~ 52304228 (+) True G27678
TU37127 lncRNA upstream 7016 52302169 ~ 52302711 (+) True G27676
TU37126 lncRNA upstream 10730 52298779 ~ 52298997 (+) True G27675
TU37125 lncRNA upstream 12465 52297042 ~ 52297262 (+) True G27674
TU37116 lncRNA upstream 101186 52208026 ~ 52208541 (+) True G27665
TU37132 lncRNA downstream 897 52310835 ~ 52311048 (+) True G27681
TU37133 lncRNA downstream 3097 52313035 ~ 52313234 (+) True G27682
TU37135 lncRNA downstream 5174 52315112 ~ 52315495 (+) True G27684
TU37165 lncRNA downstream 33010 52342948 ~ 52348256 (+) True G27701
XR_002648588.1 lncRNA downstream 52067 52362005 ~ 52364172 (+) True LOC111188740
XM_007258974.3 mRNA upstream 221062 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 614710 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 726814 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 12054 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 57945 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 73007 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 93944 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 93944 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1131353 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1537566 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1559790 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1969650 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2861506 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 4087 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 144493 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 158834 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 450175 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1312885 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile