RNA id: TU37132


Basic Information

Item Value
RNA id TU37132
length 214
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G27681
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52310835 ~ 52311048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCACAGGTCCCACAGTGTTAATAATGGAGTATTTAAGAATGCTTCCTTCACTGCTGTACATAACCATGACATGCTCCACACTCAGCTGATGGAAGTCGGGGATGGTGAGTGGAGCATTCTCACACCCCTGTATACTGATGTTCTGATGTAGCAGATAGGAGAACGTCTCAGAACCGCCATTCTCTGACACCACCATGTACTGATGCAGACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37131 lncRNA upstream 897 52309727 ~ 52309938 (+) True G27680
TU37129 lncRNA upstream 6607 52303563 ~ 52304228 (+) True G27678
TU37127 lncRNA upstream 8124 52302169 ~ 52302711 (+) True G27676
TU37126 lncRNA upstream 11838 52298779 ~ 52298997 (+) True G27675
TU37125 lncRNA upstream 13573 52297042 ~ 52297262 (+) True G27674
TU37133 lncRNA downstream 1987 52313035 ~ 52313234 (+) True G27682
TU37135 lncRNA downstream 4064 52315112 ~ 52315495 (+) True G27684
TU37165 lncRNA downstream 31900 52342948 ~ 52348256 (+) True G27701
XR_002648588.1 lncRNA downstream 50957 52362005 ~ 52364172 (+) True LOC111188740
TU37186 lncRNA downstream 68808 52379856 ~ 52381005 (+) True G27716
XM_007258974.3 mRNA upstream 222170 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 615818 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 727922 51503221 ~ 51582913 (+) False dnajc13
XM_007252930.2 mRNA downstream 10944 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 56835 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 71897 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 92834 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 92834 52403882 ~ 52412080 (+) False LOC103030894
TU36920 other upstream 1132461 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1538674 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1560898 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1970758 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2862614 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 2977 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 143383 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 157724 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 449065 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1311775 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile