RNA id: XM_022662323.1


Basic Information

Item Value
RNA id XM_022662323.1
length 5277
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC103040973
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52293880 ~ 52321920 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGTGTAAGAGGGCGTGCCCTCTGTTTGGGGAGTGACCTGAACAGCGTAAGGGGCGTGGTTTCTGTCTAAGAGGGCTGGGGGTTCTGTTTGGGCGTGGCCTGAGCAGTGTATGGGGCTGTGGTATTTGTGTAAGAGAGCCAGGTCTCTGTTTGGGCGTGGCCGGGACAGTGAAGAGGGAGGTGTGTTTTCCGTGTAAGAGGGCGTGGTCTCTGTTTTGGAGTTTCTGGGTGAGTCACCAGTTTCAGTTTAAGCTTTTTATTGGTAAAAATGGTACATCAGCGTTTTAACGTTCTgcttaaaatgataaatatgaaatactttaataaaaaggctgtaattttttttagacaaaGTGGTACAGTACCAGAGAAGTCACATTATAATGGAAGCCTATTTCCACcacctaaaaatatatattttttttatcatgctgTTCTGACATACCTAGTATTTCTACTAAGAAATAGTTTTAAGGTACTAtcccattattttgagatactatctcattattttgagatgttttaATTACCTactgattattttaaagtactatcttattattttgagatatctAATTTTTGAAGATATTATTTAATTGTTACATACTAAGTCAGAATTTTGAGATTTCGAGGAGAAATTGAAGGCAAAATGTATATGTCAAAATAGCGACTAAATTAGTATAAATAATTAGATAGCAAATTATGTTATAATTTGAAATATTTACTACAGGTGACGGGAATGTACATTTCAATTGTCAAAGACTATGGGATGATGAGGATTTTGGTAGttaaaccaataaataaaccatataaataaatactcaatCTCCTGACCCATTAGCACCAGATTGCTATTAGTATAAGAACACTAAGTTTGCAAAGGTTTATATTGAAAAAAGAAGCACATGGCCTTGGAGGAAATGTACGTTTGTTTAAGGAGACAGCAACAGAACTTGTGGGCAGTTCCCATCTACAGGGCTATCAGTGGGTACATCTCCAACTGATATTTTTTTGGCCCTAATACGCTGTCGTAAAATGATGTCAAATCACTAATACTGTTAAAGATATGGCTCATTTCATTTTAGCTTTTACAGTTAAGGAACAGTATTTGTGTACCAAAATAGTACTTATTCTTTTAACACTCCACTGTCAGTCAGTGTTTACTACAGTGTTTACAATATTTAACAGTACAGTCAAATTGTGTTTTCATACACTGAGTacactaaaatattatataccCATTTGTCTATGTTTGTGGTGTGGATTATAAGCAAACGACAATATGCAAAGATCATAAAGACAATAGGCACTAGgacaataaatgtttatttgtgtacaCATGTGAATACATATTGTCTGTGGCTCTAAAAGAAATCACAGAGTAAGGGTTGCTTGTTCACTTATGGTGGCCATTCCCAGTATTATATAAGGGACATATAAGGCATTTGGTGCTCTTCCAAATGAATTTgatgtatttaatgtaaagtTATATCTGTCTGTTCCGTGCTGAAGTCTAAAGTAGGAGTCGCTCCACACTCTACACTATCCAAAACTCCCTCAGAAATTTTGGTATTTTTATGGCCTGTGGTCAGGCCATCCTCTCAATCTAAATTAGCACTTTGTCTCATCTCATGAACTCCACTAACAGTGCAGGCAGTTTCAGAAAGAGCTACAGAGTCGCACGATGAAGACCTGCAGAgtcttagttttagtttttctaaATTTCTATGCAATAAATGCCAATCCAAACGACAAATTCTTCCCTTTTGGAATATCTGAGGGAGATGCAGCTCTACAGACGGGTGATGATGAAGTGTCCCAGCCGCTGAAACTTAAAAGGCCTCTGCAGTTTTACGACACGCAGTTCAACGTTGTTTACGTGGGCACCAATGGGCTTCTGTCCTCTCAGCCTCCCCCTAAAGAAGATCAATATTTGAGCAGCGGGTTTCCTCTGAGCTTCCCGGCTGTTGCACCGTTTCTGGTGGATGTTGACACCAGTGTGGGAAGAGGATCTGTGTACTATCGCTCTGACAGCTCATTCAGCTCGCTGACTCGGGCGACTCAGGCCATTCAGCAGGCCTTTCCTGGGAGCCAGTTTAGACCCACTCACTTGGTCATCAGCACATGGGATCATGTGGCCTGTTTTAAGGAAGATGCATCAAAAGGATATTGGGTAAGCAGCTTCCAAGTCATTTTGGCAGGAAATAAGACAGACACTTTCGCACTATTCCTGTATGCTGATAATGGCACGCAGTCATCTGAAAACAGTCGTGACGTCATGGGTTCAGAAGCTGAGCTTGGGGTTCTTGCAGGCTTCAGCAGGGGAGACACGTCCGTCACAGATGAACTCTACCACAACCTGTACAGCTCGATGGAAAGTGCCAGCAAACTCTTTCAGGAGGGAAACTCGGGTATTAAAGGCTTGTGGATTTTCCATATTGGAAGCAGCCGCTACTCTTTCCAGAAGATAATAGGTGCTGCTGGTCCACTGGCCGAGAGCACTGAGAAACCCATCACCACAACACCCATTCAGGACCATAATATCCCGGAAGAACACAATACAGTCACACCTGCACTCATCAGAGATGAAGCTGAAACTACCCCAGTGCCCCCAGTAAACGGCAGCGCATCCCCCAGCCTGTGCGGCTCAATCCTGCTGGACTGCTCCCAAGACGGCTACTGCACTGACTTCCCCCGCGGACCCTGCTGCCTCTGTCGCTCTGGATATTACGGCAATGGCAGACAGTGTTTACCCATGGGTGTGTCTCAGCGTCTGAATGGAAAGCTGAGTGGTCACGTGTCtgtcggagctgctgatgttcaGGTAGACAAGGCGGATGTCCACGGCTATGCTGTGCCGGGGGAAGGCAGAGTTTACGTCTCTATCAGTCCCATCCCTCCGCAGGTTGGGTGGGCTCTCATGGCCGTCAGTCCACTGGTCTCCACATTTGGCTGGCTGTTTGCCCTCACTGTGCAAAACCATCAAAACGGCTTCAGTATTACtggTGCTGAGTTTTCACACAGGGCAGAAATGACATTCTATCCAGGGAATCTTCGCTTAAACATCACTCAGCAGGCTCGGGGCATGGACTATCTCAACCACCTGAAAATGGAGGTTCATGTCAGCGGAAACTTACCCAGCATTCCCAGTGGAGCTAAAGTTCAGTTCCAGCCTTTTAAGGAGACACTTCATTACAATCAGTCAGGTGACCCTGtaATAACATCATCCAGTCTGCATCAGTACATGGTGGTGTCAGAGAATGGCGGTTCTGAGACGTTCTCCTATCTGCTACATCAGAACATCAGTATACAGGGGTGTGAGAATGCTCCACTCACCATCCCCGACTTCCATCAGCTGAGTGTGGAGCATGTCATGGTTATGTACAGCAGTGAAGGAAGCATTCTTAAATACTCCATTATTAACACTGTGGGACCTGTGGGAGGTGAGCTGCCAGATCTGGTGGAGCTGAATCCGTGTCAGTCAGGGAAACATTACTGTGACCCCATGGCCCTGTGTCTGCCGGGAGAGGGGCTGCAGTACCACTGCCAGTGTGCCATGGGCTTCAGAGGCGATGGAAGGAACTGCTATGatgtgGATGAGTGCACTGAGGGTCTGAGTTCCTGTGGTCCTCATTCAGAGTGTGTGAACATGCCCGGCAGCCACCACTGCCTGTGTGAAGCAGGCTACGAGTTTGATTTCGACtggaaagtgtgtgtggATATTGACGAGTGTGTGCTGAAGCTGTGTCACCCGTTGGCTTCCTGCTCCAACACGCTTGGTTCCTTCCACTGCCGCTGCTGGCCTGGCTATGAGGGGGACGGCTTCCTGTGCCAACCACAGAAGCAGGTGGAGCTGGTCATGTCAGTGTGTGAGCGCCACAGAGACAGTCTGTTGAAGGGTCTGCAGAGTTGGGGGGGTGACGCCATGCTGCAGGATTACATCCCTCAGTGTGATGAGAAGGGCCAGTACAAACCACTGCAATGTCTGGGATCAACTGGACACTGCTGGTGCGTGGACAGCAGGGGGCAGGAGAGAGTAGGAACACGGACGCTGCCGGGGACAGCACATGCTAACTGCGACCAACCAGCCCCTCTGGTCCCGAGGGCGGAGACGTTGTGCGAGCGCTGGAGGACCACTCTACTGAGTCACTATGGTGGCCAGCCTGACCCTCAGGACTACATGCCCCAGTGTGACGCACGTGGACACTTCCTATCTGTGCAGTGCTACGGCAACAGCAGCTACTGCTGGTGTGTGGATTCCCAGGGCCGGGAGGTGATGGGAACACGATCGCATGATGCAGTAAAACctgcctGTATCTCGTCTGTCCCGTTGGTGGTTCAGTCATCAGTATATCCAGTAGTGACCTCTTCACCCTCAGGACCAGCACTTCTTTTTGCCCACGGatcagaaatccaagtaattcctTTGGATGATTCCCATCCAGTCCAGGGAAAGTCCGCTGTGCTGCTGTCTGAACATGACTCTGTGGTGGTTGGGATTAGCTTTGACTGCCAGGAAAACACTCTGTACTGGAGCGACATGGCCAGACGCTCCATTAGCAAAGTCAGTTTAGTGTTTGGTGCAGAGCCAGTCACCATCATACACACAGATGTGGTCACTCCGGAGGGTGTCGCGGTGGATGCTGTTCACAGACTGCTGTTCTGGGTGGACAGTGGAAGTGACCAGATCGAGGTGGCTGATTTAAACGGCCAAAACCGGAAAGTTCTTTTTGACACTGGCCTGGTCAATCCAAGGGCCATCACAGTGGACTTCACCAGCAGTACTCTGTTCTGGACGGATTGGGACCGTGATGACCCCAGAATCGAGAGTTCCTCTCTGGATGGCCTTCGCAGAAAAGTGCTGGTTGGTAAAGGACTCAAACTGCCCAATGCCTTGACCCTGGACCCTGTAACACACCAGCTGTGTTGGGCAGATGCAGgcacaaagAAACTGGAGTGTGTGGCTGCAGATGGAACAAAAAGGCAGGAGATAAACAGTGAACTTAACTACCCGTTCAGTCTGACCGTTTATAACGAACACATCTACTACACTGACTGGGAGAGAGATGGAATAATGGTCATCAACAAAGTAACCGGAAATCATACAGAATATCTCCCCGTGGCAAAAGACAATCTGTATGGAATTACACTCATCCCCTCACAGTGTCTGTAAGTGAGTGCCCTGTGAAAGAAGTCCTCAGCAGTGCAGAGcaaagtttttctttctttgtggagatttaataaagctttattttaaaacatgtattaatTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37109 lncRNA downstream 110664 52181616 ~ 52183216 (-) True G27660
TU37093 lncRNA downstream 201152 52090754 ~ 52092728 (-) True G27645
TU37079 lncRNA downstream 289136 52004247 ~ 52004744 (-) True G27632
TU37077 lncRNA downstream 355525 51938101 ~ 51938355 (-) True G27630
TU37075 lncRNA downstream 387413 51906087 ~ 51906467 (-) True G27628
TU37214 lncRNA upstream 43921 52365841 ~ 52401196 (-) True G27738
TU37233 lncRNA upstream 157342 52479262 ~ 52479538 (-) True G27755
TU37284 lncRNA upstream 398741 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 456611 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 460105 52782025 ~ 52782480 (-) True G27808
XM_022662440.1 mRNA downstream 21500 52265048 ~ 52272380 (-) True LOC103029105
XM_007258977.3 mRNA downstream 798608 51484768 ~ 51495272 (-) False lztfl1
XM_007258976.3 mRNA downstream 798608 51484768 ~ 51495272 (-) True lztfl1
XM_022662381.1 mRNA downstream 812004 51465284 ~ 51481876 (-) True LOC103045300
XM_022662441.1 mRNA upstream 52596 52374516 ~ 52382949 (-) True cgrrf1
XM_007252933.3 mRNA upstream 52596 52374516 ~ 52382530 (-) False cgrrf1
XM_007252936.3 mRNA upstream 116537 52438457 ~ 52445807 (-) True LOC103031417
XM_007252937.3 mRNA upstream 129383 52451303 ~ 52456147 (-) True LOC103031734
XM_022662303.1 mRNA upstream 162814 52484734 ~ 52490887 (-) True LOC111188512
XR_001518286.2 other downstream 1553446 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1754208 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1754208 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1754208 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1762241 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 464552 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 464552 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1300356 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1728841 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2235026 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile