RNA id: TU37199


Basic Information

Item Value
RNA id TU37199
length 600
RNA type TUCP
GC content 0.52
exon number 3
gene id G27729
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52454431 ~ 52456164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagtataataaaattgtttattattattatttattcatacatttaaagCCTGGATGATTATAACAGGAATAAGAGTCATTGCACATCCTTACCTGGGTCATCTTCTCCCTGTTGGCCTTGGGGTTCAGGGGAGCCTCAGTCAGAAGGGTGGGGTGTTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCATCCCAGTTGGTGATGATACCATGCTCAATGGGGTATTTCAGGGTCAGGATACCTCTCTTGCTCTGAGCTTCATCTCCCACGTAGGAGTCCTTCTGACCCATACCCACCATCACACCCTGGTGGCGGGGACGGCCAACAATGGATGGGAAGACAGCTCTGGGGGCATCATCACCGGCAAAGCCAGCCTTTACCAGGCCGGAGCCATTGTCGCACACAAGAGCGGTGGTCTCGTCATCGTCACACATGGTTCTGGCTTAGATGCAGATGTTCTTCAGAAGCTGCTTCCCAGTGGAGAGTTTGTGGTGGTTGTGACAGTGCAGGCCCGGGTTTTATACCATCCCGGCTGTGTGGCCCCGGCTGGGCATCCCTCACCTTATTTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37186 lncRNA upstream 73426 52379856 ~ 52381005 (+) True G27716
XR_002648588.1 lncRNA upstream 90259 52362005 ~ 52364172 (+) True LOC111188740
TU37165 lncRNA upstream 106175 52342948 ~ 52348256 (+) True G27701
TU37135 lncRNA upstream 138936 52315112 ~ 52315495 (+) True G27684
TU37133 lncRNA upstream 141197 52313035 ~ 52313234 (+) True G27682
TU37241 lncRNA downstream 72564 52528728 ~ 52531000 (+) True G27763
TU37251 lncRNA downstream 147782 52603946 ~ 52693356 (+) True G27772
TU37254 lncRNA downstream 211171 52667335 ~ 52672114 (+) True G27775
TU37263 lncRNA downstream 305435 52761599 ~ 52765175 (+) False LOC111188765
TU37260 lncRNA downstream 308665 52764829 ~ 52767728 (+) False LOC111188765
XM_007252935.3 mRNA upstream 42351 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA upstream 42351 52403882 ~ 52412080 (+) False LOC103030894
XM_022678348.1 mRNA upstream 53613 52382945 ~ 52400818 (+) True ddhd1
XM_007252931.3 mRNA upstream 80284 52367883 ~ 52374147 (+) True psmc6
XM_007252930.2 mRNA upstream 126629 52321992 ~ 52327802 (+) True LOC103029411
XM_007252940.2 mRNA downstream 118774 52574938 ~ 52609821 (+) True LOC103032675
XM_022662526.1 mRNA downstream 313078 52769242 ~ 52781864 (+) False LOC111188745
XM_022662521.1 mRNA downstream 314663 52770827 ~ 52781864 (+) True LOC111188745
XM_007252946.3 mRNA downstream 329495 52785659 ~ 52789369 (+) True LOC103033541
XM_022662560.1 mRNA downstream 354889 52811053 ~ 52816494 (+) True LOC111188773
TU37134 other upstream 140165 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1276057 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1682270 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1704494 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 2114354 50339710 ~ 50340077 (+) False moxd1
trnac-gca_8 other downstream 12608 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 303949 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1166659 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 1167018 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 1167285 53623449 ~ 53623521 (+) True trnar-acg

Expression Profile