RNA id: TU37254


Basic Information

Item Value
RNA id TU37254
length 4739
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G27775
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52667335 ~ 52672114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGGTTTAATAGAACaacaacattttattacaaaagaAATAATTTACAGTTTAAGTAAAACACAACTCTGCAGAACAATCTAGTGTCCAGTTGTTTTACTGTATGGCAGGCCTTTAAATAAGACACAGTAACTTATTCACTGGCTAGATCTACTGTATACGCACTGATCAGCAGCACAATATTCCATTAACAGCAGATCACAGGGAAGGTTTATTTTATAGTGAGTTCATATATGAAGGCATCAAGGGAAAACCTTATGAAATAGCTTGTTAGAAATAGTCTGCACATTTCGTcattcagaaaaagaaaaagaaaacagtggaATAAAGGTTTGATTATTCCAACAGGTTGTAACATATAGAAATTGAATCAACTGCACCAGGATTGTCCTTAAAATCTGTTTATAAGTTTCTTTACTGCAGTGGAGCTCAACAGACCATCCACAAATAAAGCTGTAGCTCTCGCTGTGTACCAGTGATCCTGCTGACAAATTACATTATAATGTGATAATTTTCCCAGTAAGAAATCCCAACTCCCGTCATGGAGCCTAGAAAAAGGAGTTGGTCTTTCTTACTGGTGAATTGACCAcattataatgtgatttatcagcaGGATCACTAAAATCAGCTGTAATGAGCTAATACTACTGAAGTGTGGAGGTAGAGAGTGTAATTTTGGTGGGTGTGGTGAACAGTAGGGTGAATGTCTCCAGTGGGAATCATATGGTGTGTACCAATTGTGTACAAATTACTAGCACTATCTAGTTTTTGTTATGCCACAATGCACTGTAATTCGGAAAGGGCAGAGCTACTCACATCtgtaataatattacaaaaatgtgGACAAGGGTACAGTAGTAAATTACAATTAAGTTGGGGAGGTGACTGGATCTTCCATACTTCCATTAGTGCCCTTAGTTGATTTCTCAAATGAATGTATAAGGGGAAAGCAGCTTCCATTATTTAACGTTCATACCCAATACATACCCAATACTTTTTATAAAAGAAGTTGatagttttgtttttaactGAACCTTCGAGTTTGAGAAAatcagccaattaaaaaaagaaacaagaatGTAAGTTCTgttccttttttattctttttttttaaagaacatttcatAAATAAATGAGTGGCCCCTTAATCAATATACTGTTACTTGCAACTCAAAGTTAAGAAAAGTGTCAGCGTTAGCTGTTCTGACAACTACTACAGTCAACTGagcagaaaataataaagaaataataaagaaagcTTCACACAAAGTCCTGGATGTGTGGGAGTGTTACTGACAGTCCATTAACACCTCCGCCTCActccactttattattaatttacacacTGACCCTCAGCACACTGGCTACTGTCAGCAGCACTAAAGAGACTCTGCAGGTTCAGAGACCTTCATAAAATGGTGCTGTGAGCATCagtttaaatactttttcagaAAGCCGTGCTGGATTTGACATTTTAAATCTGTCCTCATAACTGCATTAAAGGTTTGGTTGTGtcttttggtccattcatcttGGGACATGATGTAAATAAAGAGAtaatgtgtgaaaacaaataaagataTGCTTAAAGAATAGCCTTGATCTGTTTCTGCAAATAAGCTTTTTAAATAGTGACAGCATTCTCATAGTTTCTACAACAGCTaagcactaggggtgtgccatatcatattgtttgcaataatatcgccaacatttttgaatgttgtgaacaatattataccataaaaatcacccacccctaatatcacataatttttgctgttttagcaaaagaaaattcacactgttcccatttcccattaaaatctactagagacagattatatctgtccagtattatttattttactttaatcctggatatatatggagatatttaaaatgcattattagtattgttgtagtagtgtgttattgaaaaaaaaataatctcaaattcagtgttttgtcacattgccaagagtatcattattgcgaaaataccatgaaatttcgtgatattattttagggccatatcgcccacccctactaagCACACTTTTGTGCATAAATTAAAGTCAGATGTCGCTCACTGAGGTTGGGaaaataaaaaccaaaaatcCAGAGATGGACATGAATTGTCTGTatattttaactcttaaaatatatatttcccatattattattactttggaACAACTCTTTGCATGTAGATAACAAATAATAATCCGTCCATCTTCACATCCACTTCTTCCTGGTCAGAGTCAAGATGGATCAAGAGCCTACTTAGAATCACTGGGTGCAAGACaggtgtaattaaaaaaatctgggaACATAAGGGGTTAATTTTTCAGAATTTTCTGTTAAAGGAAATACTctcatttaaccctttcagacctgaattatctccagtgatggaaaaaataatctgaaatgCACAGAAAAAAGACTAATATTCTacaataaaatctatatagtaaataaatccaaataactaaaatatttatataattacttttcatttttggatttgAATCATATTGctttggaagcctgtgtgtaatatttcacacttcatattgaccttttcattttataaaccatcctaaaacagtaaaaaaaaaagtgtcctaaatcacattaaaataataaaaaatagctgtTAACTTTCCTCAgtggctctagtactactgtttttccagtgtttttgcagtgggcggtgccaagttactgttttattggtttctaaacttgttcattggttgggtcatggtctattctgatggacaacagctcttgAATAGTGTTAtgctgtccattgtaatggatgcagtgtctgaaagggttaaatgcaTGTTGACCTAAAGGCTTATGCTTAAATGCTTTAtaggacatttaaaacaaacaaagtttGTCAGGTAGACCAGTCCTAAAAGCTCCTCCTCGCTTCAGTCTAGCATCTTATAAACTCCCAGTACTACCTTGGCGACTATCCAAAGGATCCCAAAACAAGTCAATTTTCCTTTCCAGTCATTATGAATTAGGGTACTGTACATATGTTTGATGGAACGGAAAGATGCTTTAAGCATAAGCCTTTAAAAACACATGTTTAGTCAGGACAGGAGTGGGTCCAATCCTTTGTCTGGTTTCTGCAGATGCTTTTCCTAGTGCAAGTTCTTGGAGGTCTTTGGAAAGGtcatatgtgtgcgtgtgtttgtgtgtgtggagcaggTGTGTACTTATGTGTCACCAGAACGGGAGCTCTCCTCCACTTTGTCCAAGGCAAGGCACCCCGAGTTGCCATGGCAACCCGCGCCTCTCCCCAGAACTCATTAAAAGCGAGGCTTATTGTCTCGCTGGCAGACGGCACCGACGCTGACAGGAACAAAGCGGCACCCTGCCGATCGGGACGCGGGGCAATGAATCAAAAAACAAGCGCAAAGtactgaaattaaacaaacgTGAGGAATGGTGGACGTGAGGGGAAAACGCGATGTTCTGTGCGTGCTGAGAGTTCAGCCGATCGATTGTCTCTGTGGTGCGAGGGGCATGATTGTAGCGTGTGTTAAAGAGGCAGAACCACCAAGGGGATAGCATAGAGGGTGGACAAGTTAATGTGCAAATAACAGAGATGGCCCAATTGATGAATGATTAAGAATGCTCAACTAGGGCTCAGAGTGGTACAGCGGATTAAGGCGCTGTCACTGTGATCCCTGGATTGCTGGTGTGAATaccagatcatgctgcttgtcatcagcagccagaatccgagagagcacaacagaccttgctctctctgggtgagtagttTGATGGTGGTCAGCAcgggcatctgttagctgatctATCGGAGCTGGGGAACCATGCTTTCCTCTAAGTGCGCTGGCTACCCAGTGATGTTTAAAAAGAGTgcaagtcttcaccctcctagtatTTGAAGCATTGCCTAATGATAAGGGGAGTTCATATAAACAGGGATTGATTAATTGACCTTCCAAATTGAGAAGAAATAGGAtagaattagaaataaatatgttttaaggtCTATCAAGTAGAAAAACTGGCAGACTGTACacttaaaagtaattTTATTGGTCTCATATCCATTTGAAATATCAGGGATTTTTGCAGTCGATTGACATCTCAAATAGATGATCTCTAtacatttaaagctttaaaaactcCATACATTGAAACTAGaggcaaaaatatatacaaaatgttCATAAGTACCAAACGTGGCTTATTATTCTTTCGTTTCTGCTACACCATGCTGTTCGTAATTCATCAGCTTACAGGAAGCAAACAGAAGGAGCGATGCATCAAAAATACTCTAAAAACCTTCACATTGATTTGTGTAAAAATCGTaagggagaaagaaaataaacgTTACATCTACGTATGCTACGCGAAAGACCTCACCACCCTGTTCTAGAATTTCGGCTCAGTTTTGGCCTTCAGTTTGGATCTGGTCTCTCAGGTTTCTGTCCAGTTTGAGTTTGTCCAGTTCAGAAAGTGAAGGCGTAGACCACGCCCACCACCACGATGTTGCCGATGGTGGCGGTGATTGCGATCCACAGCCAGATGGCATCGCGGGACATGGACTGCTGCTCCTCCTGCTGGTGGTGGGCTGCCATCGCAGCTGTGTGGACACTGGCAGAGGAGTTGAAGAGTGAGTGGTCGGTGCTGTAGTCGTCATTGGGGGACGAGTCCATGAAGGCCCCCGTCATGACCGGga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37241 lncRNA upstream 136335 52528728 ~ 52531000 (+) True G27763
TU37186 lncRNA upstream 286330 52379856 ~ 52381005 (+) True G27716
XR_002648588.1 lncRNA upstream 303163 52362005 ~ 52364172 (+) True LOC111188740
TU37165 lncRNA upstream 319079 52342948 ~ 52348256 (+) True G27701
TU37135 lncRNA upstream 351840 52315112 ~ 52315495 (+) True G27684
TU37263 lncRNA downstream 89485 52761599 ~ 52765175 (+) False LOC111188765
TU37260 lncRNA downstream 92715 52764829 ~ 52767728 (+) False LOC111188765
XR_002648597.1 lncRNA downstream 93924 52766038 ~ 52768976 (+) True LOC111188765
TU37355 lncRNA downstream 232206 52904320 ~ 52904678 (+) True G27834
TU37371 lncRNA downstream 357695 53029809 ~ 53030010 (+) True G27849
XM_007252940.2 mRNA upstream 57514 52574938 ~ 52609821 (+) True LOC103032675
XM_007252935.3 mRNA upstream 255255 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA upstream 255255 52403882 ~ 52412080 (+) False LOC103030894
XM_022678348.1 mRNA upstream 266517 52382945 ~ 52400818 (+) True ddhd1
XM_007252931.3 mRNA upstream 293188 52367883 ~ 52374147 (+) True psmc6
XM_022662526.1 mRNA downstream 97128 52769242 ~ 52781864 (+) False LOC111188745
XM_022662521.1 mRNA downstream 98713 52770827 ~ 52781864 (+) True LOC111188745
XM_007252946.3 mRNA downstream 113545 52785659 ~ 52789369 (+) True LOC103033541
XM_022662560.1 mRNA downstream 138939 52811053 ~ 52816494 (+) True LOC111188773
XM_022662592.1 mRNA downstream 153070 52825184 ~ 52829284 (+) False LOC103041583
trnac-gca_8 other upstream 198492 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 211171 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 353069 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1488961 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1895174 50769885 ~ 50772161 (+) False lyrm2
TU37261 other downstream 87999 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 950709 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 951068 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 951335 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 951503 53623617 ~ 53623689 (+) True trnam-cau_5

Expression Profile