RNA id: TU37260


Basic Information

Item Value
RNA id TU37260
length 543
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC111188765
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52760113 ~ 52768976 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGGTCCTGGTCATCCAGCACGTTGTAGGCGGCGTAGTTGTCCACGCCATGCATCCTGAGGATCTGCACCACGGCGTTACTGAACCCGCACATGGGCTGCGCCGGGGTTCCCTTCATGAACACCACCACCTTATCCTTCTTCACCATCTCCTCCAGGCTCTTCTGACCCTCAGCCGAGCACAGGAGCCGCGAGCACGCAGCGCCGCCGCCGGGCTGAGTTAACCTGGAGAGCGCTGTCAGCGCCCGCACAGACCGAGCGGCCGCTCCGAACACACTGTTCATTCTGAAAACGGtgaaaaaaacaccaacaaaacaaacaaacgacCAAAAACTCGCTGGACTTCACCGCTTCCTCCGAGACGCCACGACCAGCCAGACTTTTCAAGACAAATCTCTGTAGCCCCGCCCCGCCAGCGGaGAGAACTTCTGACTGTGCTGTGAAGAGGTGACCTGATATAAAGCATAATGGAACGAGATGGAAAAAGCTTTTCTGCACTAGTTTAATATGCCCTTTCCAAACGGGCCATATTCACTAATTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37251 lncRNA upstream 71473 52603946 ~ 52693356 (+) True G27772
TU37254 lncRNA upstream 92715 52667335 ~ 52672114 (+) True G27775
TU37241 lncRNA upstream 233829 52528728 ~ 52531000 (+) True G27763
TU37186 lncRNA upstream 383824 52379856 ~ 52381005 (+) True G27716
XR_002648588.1 lncRNA upstream 400657 52362005 ~ 52364172 (+) True LOC111188740
TU37355 lncRNA downstream 136592 52904320 ~ 52904678 (+) True G27834
TU37371 lncRNA downstream 262081 53029809 ~ 53030010 (+) True G27849
TU37396 lncRNA downstream 536200 53303928 ~ 53304405 (+) True G27873
TU37398 lncRNA downstream 560144 53327872 ~ 53330777 (+) True G27875
TU37446 lncRNA downstream 731747 53499475 ~ 53504424 (+) True G27903
XM_007252940.2 mRNA upstream 155008 52574938 ~ 52609821 (+) True LOC103032675
XM_007252935.3 mRNA upstream 352749 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA upstream 352749 52403882 ~ 52412080 (+) False LOC103030894
XM_022678348.1 mRNA upstream 364011 52382945 ~ 52400818 (+) True ddhd1
XM_007252931.3 mRNA upstream 390682 52367883 ~ 52374147 (+) True psmc6
XM_022662526.1 mRNA downstream 1514 52769242 ~ 52781864 (+) False LOC111188745
XM_022662521.1 mRNA downstream 3099 52770827 ~ 52781864 (+) True LOC111188745
XM_007252946.3 mRNA downstream 17931 52785659 ~ 52789369 (+) True LOC103033541
XM_022662560.1 mRNA downstream 43325 52811053 ~ 52816494 (+) True LOC111188773
XM_022662592.1 mRNA downstream 57456 52825184 ~ 52829284 (+) False LOC103041583
trnac-gca_8 other upstream 295986 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 308665 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 450563 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1586455 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1992668 50769885 ~ 50772161 (+) False lyrm2
trnah-gug other downstream 855095 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 855454 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 855721 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 855889 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 856340 53624068 ~ 53624139 (+) True trnah-gug_1

Expression Profile