RNA id: TU37337


Basic Information

Item Value
RNA id TU37337
length 618
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G27822
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52797565 ~ 52816766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAGCTATACAGCTAGGGTAAGAGTTAGAGGAAGTAGCCCTAATTTATAGGCTTGTAACTCTGGCTGTGAGTCACATGCTGGCTCATGATtggatgcaaagctttcagtaGAAACACTGGAGCAGAGCGAGTTGCTCTGTAGACCACAGAGGGTTCATTTATAAATCTGGTGATTCCAAGCTTTTAAATGGTTTACCTAAAGATACAACAGTTCTGACAGGTAATACTGGCAGCCTTTTGGttattattaagcaaataataagtcattaaattgcattttagagtttgtttatttattgatttaatatGCCAACAAAAGAGAAACAGCCTTATAATGGATGCAACATTTTTACATCTGCCTGATACGTAACATTTGATGGATATTCAGCAGCTTTTACTCAGTGGGGTTGTTGATCTTGCCCATGAAGAGGATGCTCCTGGTGCTGGAATCCAAAATAAACACCAGGAATGGTCTGTTGAGAACCATGATTTCAGAGATTTGAAATGATGTCAACACGATCTctatggtggtggtagcagcTGCTTCAGTGCCCTCCTCATTAACTTTAAGCACTGCCTGATGGAGGACCTGTGGGAAAATCATCAAAAAGAAGTGT

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37298 lncRNA downstream 15085 52782025 ~ 52782480 (-) True G27808
TU37284 lncRNA downstream 17672 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA downstream 17672 52778531 ~ 52779893 (-) True G27798
TU37233 lncRNA downstream 318027 52479262 ~ 52479538 (-) True G27755
TU37214 lncRNA downstream 396369 52365841 ~ 52401196 (-) True G27738
TU37357 lncRNA upstream 88011 52904777 ~ 52905476 (-) True G27836
TU37360 lncRNA upstream 121642 52938408 ~ 52942025 (-) False LOC111188804
XR_002648609.1 lncRNA upstream 121666 52938432 ~ 52942055 (-) True LOC111188804
XR_002648610.1 lncRNA upstream 121666 52938432 ~ 52941307 (-) False LOC111188804
TU37373 lncRNA upstream 214917 53031683 ~ 53033709 (-) True G27851
XM_022662540.1 mRNA downstream 31721 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 32301 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 80498 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 155981 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 243293 52525768 ~ 52554272 (-) True LOC103032373
XM_007252949.2 mRNA upstream 517199 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 517199 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 872601 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 1022194 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 1022314 53839080 ~ 53907403 (-) False akap7
XR_001518286.2 other downstream 2057131 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2257893 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 2257893 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 2257893 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 2265926 50481889 ~ 50531639 (-) True G27400
trnal-cag other upstream 805510 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1233995 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1740180 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 2027296 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 2683134 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile