RNA id: TU37357


Basic Information

Item Value
RNA id TU37357
length 700
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G27836
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52904777 ~ 52905476 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaataaacagGATAAGTGACTGACTAGAAGATTAAATGAAGATTcaaattttcttatttattttatcacaattatttaaatttgcccCTTTTACTGAATCAAGTAAATCGAATATTCTTAGAGCAAATTGAAtgaaacaataataacaatatggACCAGTCACAATGCAAACCTTAGTTTCACAGATTTGGTTTCACAAtctcaacaaaaaaacacacaaaaaaatgtctttcacagtttaacccttttttttcagtctctGAACAGTCCAAGTTTTTAACTCAAGTGCTTGGAACTTTCTGTGGCACACAGTTAACTCAGTCTCTGAAGAACAGTCTCTGAATTACGTTGTTATTAAGCAATAAAGAACAGTCTCTGCATTATTTTAACTCTTCAAATATCTTAGCATAAACCAGAGCAATACAGAAAAGTTTACCTCCCTTTAACGAATGAGATGTGAAGCTTGGAGGATGTCGTCTGAATGGCAGGGGCACGTTCGATGAAACAGCGAGGAGCTTTCAGTGTTAGAAACGAAACAGATCCGCTTAATTACGTCCGAATAGGGTTAGCCAGCAAATCCAATGCTCTCGCGGTCCAGATAGGCGCGATCTCTGATCTCCGGACAGATATCTGATCTCTGAACAGGTTCCTCTCTGCGTGTTAGCTGAGCATGCGACCAACGCAGCGTTTCTCTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37337 lncRNA downstream 88011 52797565 ~ 52816766 (-) True G27822
TU37325 lncRNA downstream 92147 52786472 ~ 52812630 (-) False G27821
TU37298 lncRNA downstream 122297 52782025 ~ 52782480 (-) True G27808
TU37284 lncRNA downstream 124884 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA downstream 124884 52778531 ~ 52779893 (-) True G27798
TU37360 lncRNA upstream 32932 52938408 ~ 52942025 (-) False LOC111188804
XR_002648609.1 lncRNA upstream 32956 52938432 ~ 52942055 (-) True LOC111188804
XR_002648610.1 lncRNA upstream 32956 52938432 ~ 52941307 (-) False LOC111188804
TU37373 lncRNA upstream 126207 53031683 ~ 53033709 (-) True G27851
TU37374 lncRNA upstream 128305 53033781 ~ 53034003 (-) True G27852
XM_022662540.1 mRNA downstream 138933 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 139513 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 187710 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 263193 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 350505 52525768 ~ 52554272 (-) True LOC103032373
XM_007252949.2 mRNA upstream 428489 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 428489 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 783891 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 933484 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 933604 53839080 ~ 53907403 (-) False akap7
TU37335 other downstream 54871 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 76824 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 2164343 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2365105 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 2365105 50535900 ~ 50539672 (-) True LOC103034285
trnal-cag other upstream 716800 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1145285 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1651470 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1938586 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 2594424 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile