RNA id: XR_002648609.1


Basic Information

Item Value
RNA id XR_002648609.1
length 1750
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id LOC111188804
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52938408 ~ 52942055 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attccaGCTTGGTATTGTGCAAAATGGGTTATTTACGTTGCCTGAACAGGCAATTTTATGTTACATGATGCTGCTTAGTTAATTGAGAGTTTGCACATGCGCACTAAGGCACAAGAAAGAACGCAGGGTTTTCAAGTGTGGCACTGCAGGGGCTCTCAAGCGCAGCACAGCAGGGGCTGTGAACACTCCTCTCTCAGGCAGCTGCTTCAAGTTTAACGGGGTTAGGAAGATTTTAGTGAATATGCACGCTGCCTGAAAAAGACTCAATGGAGTAGATCTGTGAGGAGTTTTTTCGAGTTACCAACAAAGACCTGCTAGAAACTTTCAGAGCTGCCATGGAAAAGAACACCACCAAACTACTGAGACTCTACCGTGCccggaaaaatttgaaaaaaattgcCTATTGAAAAAATTGCCTATTGAAAAATTTGATGAAAAGACATCTGATATTGTCGCCTATCGAAAGAGTGCTGTGCTGGAAGGATTGCCTTCGTTTTTGAGAGAAGATCCTGTAAAGTTGTTTTAGAAATGTTTGGATACAGATGCAGAAGATGAACAGACCAAAGGGGTATCTGTTGGAGTACTTGTGGTTTTAGAGGACAATGTCTCTGCTGCAGGCTCATCAGCAAATGAACATTGCCATTGTGCTGGAGGAGACCATAGTTCTGGATGGACTCTGCGACACCCCTACAGGCTTGGCATACCTCTTTGGCCTTTTCTGTGCTCTAAACCTTTCTTATCCAAAATTCTGAACTCCAAATTCAGATCCACTTTAATGTATAAATGCAGTGCTTGACATGTTGGTATACTGTATgatttgttgtgtttaaatacatgCAGGTGTTGTTGCTAGTGTTGCAGGGTTCCGATTGGAAGCATTTTATCAAACGTGGCATCAGAGGTGACTTGTGTTGGATTTGATCCTTGTTAAAATGAAACTCTGACATATCTACATTATTGGCAAACTAGCTTTTTATGTTGCCCTACATTTTGTCCTGAATCTCTTAAGTACATTTTGAATGCCATTCTCGAGATGTTTTTGGACCTTGGCTCAAGATACAAATgacatgtacttttttttttttcccaaaataaATTTTATCTGCAAGCCAGTGAACATGGTCACAGTAGTGAACTCCAGGATTTTTAGGTTTGAATTCCAAGATgtcttttttttaggaaaaaagaAATTGAGGTTTGATGTGCAGTGTTCAAGGTATTGTGCAATGCCTGTTTGCAAAGATGCTCCTctaaatacacattatttttggtgaaaaatattttagaattttaataAGTGTATTTTGTTTGACAAAAATATGACTATGTAGAGGCAGTTTTATCTTTCCAGCACTCATTGACCCaagtaaaaaatgaatatcCTTTTTATTCAGTGGTTTGTAAACCTTTATAAAGAACTTTCTAAACAGTTTTAAGCtttctatatgttttttgttttgttttgtttttttgataattacAGGACTCCTATTTTTTCACTGTAGCATTAGGCAGAGGAATGTGACTAGGTAAACAAATACAGCATACAAGGTTTTTACCCCTACTTctttaaattgctttttttttcttcatggttAAATGAGGTTAGATGACACTCtcaaccaacatttttaagtgatagTCTTCTTAATACGGTTCTAAATTTTGAATGCTGAGGGATTCCAATTCTTTGCATCTCTGTTATGCTATTTGCAAGTAACTGGTTGgaataaagtaatattaattaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37357 lncRNA downstream 32956 52904777 ~ 52905476 (-) True G27836
TU37337 lncRNA downstream 121666 52797565 ~ 52816766 (-) True G27822
TU37325 lncRNA downstream 125802 52786472 ~ 52812630 (-) False G27821
TU37298 lncRNA downstream 155952 52782025 ~ 52782480 (-) True G27808
TU37283 lncRNA downstream 158539 52778531 ~ 52779893 (-) True G27798
TU37373 lncRNA upstream 89628 53031683 ~ 53033709 (-) True G27851
TU37374 lncRNA upstream 91726 53033781 ~ 53034003 (-) True G27852
TU37377 lncRNA upstream 97387 53039442 ~ 53040685 (-) True G27855
TU37379 lncRNA upstream 137753 53079808 ~ 53080240 (-) True G27857
TU37384 lncRNA upstream 148969 53091024 ~ 53092627 (-) True G27862
XM_022662540.1 mRNA downstream 172588 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 173168 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 221365 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 296848 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 384160 52525768 ~ 52554272 (-) True LOC103032373
XM_007252949.2 mRNA upstream 391910 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 391910 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 747312 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 896905 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 897025 53839080 ~ 53907403 (-) False akap7
TU37335 other downstream 88526 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 110479 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 2197998 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2398760 50522899 ~ 50539672 (-) False LOC103034285
trnal-cag other upstream 680221 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1108706 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1614891 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1902007 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 2557845 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile