RNA id: TU37371


Basic Information

Item Value
RNA id TU37371
length 202
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G27849
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53029809 ~ 53030010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taataatagaatttagttttttttctattctgccTTCTGGTTATATTTAATTTgctatttacttattatttttgtgaAGAGTGTGTGGGTTTTGCTTTGGCTTTGACTTATATATTAATTTGTATATTTGAATTTTGGGGTGATcgagtgtgcagtggtgtgaaGGAGTGAATATTTAGTGTTTTACCAGTTCAAGCCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37355 lncRNA upstream 125131 52904320 ~ 52904678 (+) True G27834
XR_002648597.1 lncRNA upstream 260833 52766038 ~ 52768976 (+) True LOC111188765
TU37260 lncRNA upstream 262081 52764829 ~ 52767728 (+) False LOC111188765
TU37263 lncRNA upstream 264634 52761599 ~ 52765175 (+) False LOC111188765
TU37251 lncRNA upstream 336453 52603946 ~ 52693356 (+) True G27772
TU37396 lncRNA downstream 273918 53303928 ~ 53304405 (+) True G27873
TU37398 lncRNA downstream 297862 53327872 ~ 53330777 (+) True G27875
TU37446 lncRNA downstream 469465 53499475 ~ 53504424 (+) True G27903
TU37463 lncRNA downstream 504590 53534600 ~ 53535225 (+) True G27917
TU37469 lncRNA downstream 546766 53576776 ~ 53577198 (+) True G27923
XM_022662592.1 mRNA upstream 200525 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 200525 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 200525 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 200525 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 213315 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 933552 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 933552 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 933552 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 933552 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 933552 53963562 ~ 54049416 (+) False epb41l2
TU37261 other upstream 264634 52760113 ~ 52765175 (+) False LOC111188765
trnac-gca_8 other upstream 560966 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 573645 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 715543 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1851435 51174488 ~ 51178374 (+) True G27489
trnah-gug other downstream 592813 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 593172 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 593439 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 593607 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 594058 53624068 ~ 53624139 (+) True trnah-gug_1

Expression Profile