RNA id: TU37392


Basic Information

Item Value
RNA id TU37392
length 701
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G27869
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53183929 ~ 53184649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caggaacgtttccagaacatcttgatatacggcagcattgacagtcttcttgaggaagcagagtttccctacacctcgagcggacacgccaccacgacgccagacacgaggaccttggtcaccgaaggagatgcagaagcgtgattcgtcactgaagaccactttctgccagtcttcagcagtccactcgccgtgttctttggcccacttcagccgtttctccatttgtttcttgttcagcatcggttttactgctggaacgcgagatttgaagccgagttcgcgcagacgacggtaagtggttgatctggagacgtcagcgccggtctgcttgttccacaagtcggtgagctcggaagtggacttgaaccggttgctgactgcgatctttctaagctgcttgttgtcgcgagcagaagttggtgcgcttgctgcagtttttcttgagagctttgcagacggaagactgtctgatgccgagctgctcagcaattttagtttggatcaagccttgttggcgaagggcttgaatttgagccactattccggttgagaggtcgcgctgcttacccatgattgattttacaacttagaaattctactcaaccctgactttatactgcacagtgaacactcttcacagaaaacaaaaattcgagcatttattctaattcaatgaaacggtttctccattattctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37384 lncRNA downstream 91302 53091024 ~ 53092627 (-) True G27862
TU37379 lncRNA downstream 103689 53079808 ~ 53080240 (-) True G27857
TU37377 lncRNA downstream 143244 53039442 ~ 53040685 (-) True G27855
TU37374 lncRNA downstream 149926 53033781 ~ 53034003 (-) True G27852
TU37373 lncRNA downstream 150220 53031683 ~ 53033709 (-) True G27851
XR_002649729.1 lncRNA upstream 38205 53222854 ~ 53224149 (-) True LOC111191924
TU37424 lncRNA upstream 122993 53307642 ~ 53326688 (-) True G27883
TU37416 lncRNA upstream 143222 53327871 ~ 53362114 (-) False G27882
TU37411 lncRNA upstream 145148 53329797 ~ 53359600 (-) False G27882
TU37417 lncRNA upstream 145148 53329797 ~ 53359600 (-) True G27882
XM_022662540.1 mRNA downstream 418085 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 418665 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 466862 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 542345 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 629657 52525768 ~ 52554272 (-) True LOC103032373
XM_007252949.2 mRNA upstream 149316 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 149316 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 504718 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 654311 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 654431 53839080 ~ 53907403 (-) False akap7
TU37335 other downstream 334023 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 355976 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 2443495 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2644257 50522899 ~ 50539672 (-) False LOC103034285
trnal-cag other upstream 437627 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 866112 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1372297 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1659413 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 2315251 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile