RNA id: TU37396


Basic Information

Item Value
RNA id TU37396
length 458
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G27873
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53303928 ~ 53304405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattacatttacatttacatttatggtatttagcagacgcccttatccagagcgacttacaacagtgcttcaaagttacttaagatatccaaagctagtttgtagactaggatcaagagatacatagagcttaatcatgttaagaaccctaggaaccttttttttttattagtttaggaactctttgaaaagatgtgtcttcagtcgacgtttgaagaccgtgagtgactctgctgttctgacatccagtggaagttcattccaccaccttggtgccagcacagagaagagtctggatgtctgttttctgtgtgttttgagtgatggaggttcgagccgagccgtactggaagctctaagagctcttggtgcagatctggctttgaccatcgccatcaggtatgaaggtgctggtccgttttttgccttgtaggccagcgtcagggttttgaatcgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37371 lncRNA upstream 273918 53029809 ~ 53030010 (+) True G27849
TU37355 lncRNA upstream 399250 52904320 ~ 52904678 (+) True G27834
XR_002648597.1 lncRNA upstream 534952 52766038 ~ 52768976 (+) True LOC111188765
TU37260 lncRNA upstream 536200 52764829 ~ 52767728 (+) False LOC111188765
TU37263 lncRNA upstream 538753 52761599 ~ 52765175 (+) False LOC111188765
TU37398 lncRNA downstream 23467 53327872 ~ 53330777 (+) True G27875
TU37446 lncRNA downstream 195070 53499475 ~ 53504424 (+) True G27903
TU37463 lncRNA downstream 230195 53534600 ~ 53535225 (+) True G27917
TU37469 lncRNA downstream 272371 53576776 ~ 53577198 (+) True G27923
TU37481 lncRNA downstream 309372 53613777 ~ 53614007 (+) True G27935
XM_022662592.1 mRNA upstream 474644 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 474644 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 474644 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 474644 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 487434 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 659157 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 659157 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 659157 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 659157 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 659157 53963562 ~ 54049416 (+) False epb41l2
TU37261 other upstream 538753 52760113 ~ 52765175 (+) False LOC111188765
trnac-gca_8 other upstream 835085 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 847764 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 989662 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 2125554 51174488 ~ 51178374 (+) True G27489
trnah-gug other downstream 318418 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 318777 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 319044 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 319212 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 319663 53624068 ~ 53624139 (+) True trnah-gug_1

Expression Profile