RNA id: TU37452


Basic Information

Item Value
RNA id TU37452
length 1182
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G27906
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53457805 ~ 53529684 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAAcctgctgtttctgtgttttgcagagcTGTCCGGAAGAGTTTTGTGCTTTGGAAACATCATCTACATTAAAAAATGAGTGAAAGCTATGGAAACATGTGGACACATTTCTGTGAGAAGGCTTCCTCTATGATGAGCAGACGACAGCCTTCGTTAAACGGACTCAAAACAGTTTTGTAGAATCTAAAATGCAGCTTTATGTGCGGATGATGGAATGACTCATGTTCTTGATTTCTGAGCTCATCCTGTGCTGATGACGGAGGCTGAAGACCGGGGATTAGTGCTCTAATTATATTCCGGAGTCTGGTCCgttagtgcaggtgttgtgtggGCTGGAGAACGTTCCCCGCTTAACCATCAGGACCCAAACATGTTTGTTCTGGCAGACGGATTCTCCACTTTATCCCGGCAGCTGTAGCTTTTCCAGCGTCTCATCGCTACAATTCAATTCCCTGCCACAGAGACGGAGCTGCTGCTTCTTTCTGCTCCTGCTGTCAGGGCGAGGTGCTCCTCCGAGTCACCGTGCCAAAATACTGCCGCTAAATTGGAAACTGTCACGATCTCCTCTTCACAGAGAGGAAAGACGACGGCCTCGGACTGCAGGGGTGAAGGAGACGGAATGGGAAAAGGGGTGGGAAGAGTTTCGCAAGGACCATGAGCCAACACTGTAAAAAGAACACTGTAAATGTGGCTAGTAAATTGCTGtagtaaattttacagtttgcATTCTATACATTTAATCACAGTATCTATAAAACACTATACTcgtgtattacagtattaatcacagcactgtaatgattataatactttataaacatGCTGCTATGTACTGCTCACAGCAAATATTTTAAAGGATATTTTAAAAGGCATTACAAAGgcatttgaaatttaaattttacatttacaaatggTAGTACAGTACAagtacagtgccagtcaaaagtttggacatgccTCTTCTTGTCATGTTTTCGTCCTGTTTTGGTTCCCTcaagtctgtctgtgtgtttatctcttgtctcCTCCCCTGTTGCTTACCTGTtcgtttgtagctccgccccctcgttaggtcccaggtgtttcccattTCCTGACCTTGTCcgtgtgtataaatagtcctcCTTGTTCCTTTGTTATTTGCCCCGTTGATTTTGCGttagtgtttcatgttttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37416 lncRNA downstream 95691 53327871 ~ 53362114 (-) False G27882
TU37411 lncRNA downstream 98205 53329797 ~ 53359600 (-) False G27882
TU37417 lncRNA downstream 98205 53329797 ~ 53359600 (-) True G27882
TU37424 lncRNA downstream 131117 53307642 ~ 53326688 (-) True G27883
XR_002649729.1 lncRNA downstream 233656 53222854 ~ 53224149 (-) True LOC111191924
TU37464 lncRNA upstream 4956 53534640 ~ 53534997 (-) True G27918
TU37465 lncRNA upstream 12177 53541861 ~ 53542276 (-) True G27919
TU37466 lncRNA upstream 31587 53561271 ~ 53561525 (-) True G27920
TU37468 lncRNA upstream 32915 53562599 ~ 53563020 (-) True G27922
TU37491 lncRNA upstream 92387 53622071 ~ 53622288 (-) True trnal-cag
XM_007252949.2 mRNA downstream 47736 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA downstream 113061 53333965 ~ 53344744 (-) True LOC103035653
XM_022662540.1 mRNA downstream 691961 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA downstream 692541 52760053 ~ 52765264 (-) False glrx5
XM_015606803.2 mRNA downstream 740738 52670111 ~ 52717067 (-) True LOC107197707
XM_022678355.1 mRNA upstream 159683 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 309276 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 309396 53839080 ~ 53907403 (-) False akap7
XM_007259688.3 mRNA upstream 309396 53839080 ~ 53907403 (-) True akap7
XM_022662649.1 mRNA upstream 355412 53885096 ~ 53907412 (-) False akap7
TU37335 other downstream 607899 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 629852 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 2717371 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2918133 50522899 ~ 50539672 (-) False LOC103034285
trnal-cag other upstream 92592 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 521077 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1027262 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1314378 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 1970216 55499900 ~ 55501760 (-) True LOC111189318

Expression Profile