RNA id: TU37481


Basic Information

Item Value
RNA id TU37481
length 231
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G27935
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53613777 ~ 53614007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCATGTTCTGCAGCCTCTCCTACCTGCACCCTctgcactcaaaacacacagatggtTGCTTTTACTCAAAGTTTCTGGATGTCCATAGCAACATTGACCACAATATGCTGTTTTGTTCAGACTATGAATCAGCATGTTAACACACTCAGTGATTGTATTGGAACAGTGGTGCATGTGAAAGTCTGGGATATCTGTTTAATAGAAACTGGATATTAAACAGTCAGTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37469 lncRNA upstream 36579 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 78552 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 109353 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 283000 53327872 ~ 53330777 (+) True G27875
TU37396 lncRNA upstream 309372 53303928 ~ 53304405 (+) True G27873
TU37508 lncRNA downstream 60581 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 73692 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 77719 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 81943 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 99758 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 784493 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 784493 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 784493 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 784493 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 797283 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 349555 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 349555 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 349555 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 349555 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 349555 53963562 ~ 54049416 (+) False epb41l2
TU37261 other upstream 848602 52760113 ~ 52765175 (+) False LOC111188765
trnac-gca_8 other upstream 1144934 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 1157613 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 1299511 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 2435403 51174488 ~ 51178374 (+) True G27489
trnah-gug other downstream 8816 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 9175 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 9442 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 9610 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 10061 53624068 ~ 53624139 (+) True trnah-gug_1

Expression Profile